Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03931 ATGAGTAATCGACAAAGAAAGAGGAATTTATTGTTAGATCTGAACAACATTGCATTAGACGAGTCTTCGCACGATGAAGGGGCCTCTGAGTCTATATATGTTCCCATAAATTATCTCGAGGAAATTGATGACGATGTTGTTGAATGTTCACCTCGAGATTTTGCTCAGGCCGTGGCGAATGCAGGGAGAACTCGTAAAAGAATTGCAATTGACTTGAATTTGGAATATCAACCTATGCCAACACCTGTTGAGAATTATAGAGAGAACATGGAAAATTCAACTCTTCCATCAGAGAACATAGAGAATCCAACTATCCCAACACCTGTTATGAACTATACAGAGAACATAACTGAACCAATTGGTCAAAGTAATATAAATTTGGAAGTCATCATCAATGAAGTTACTGAAAATGACAAAACGTCACCAGAAGCTAACAAGGAAGTATCTGACCCTAATATTCAAGTTGTTGAACCTCCAAAAGAGCCTGAACCTCCAAAAGATCTTATCTTAACCTGCCCCATATGTATGGAAGCTTTTGTTGAGGCAATGTCAACTGTGTGTGGCCATATCTTTTGCAAGATTTGCATTAAAAAAGCAATATCAAGACAAAAAAAATGTCCTACATGTAGAAAAAAGCTTACATGTAGAGGGCTAAGAAGGGTGTTTATTCCATCTTCTAGTTGA 684 0.3743 MSNRQRKRNLLLDLNNIALDESSHDEGASESIYVPINYLEEIDDDVVECSPRDFAQAVANAGRTRKRIAIDLNLEYQPMPTPVENYRENMENSTLPSENIENPTIPTPVMNYTENITEPIGQSNINLEVIINEVTENDKTSPEANKEVSDPNIQVVEPPKEPEPPKDLILTCPICMEAFVEAMSTVCGHIFCKICIKKAISRQKKCPTCRKKLTCRGLRRVFIPSSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03931 227 SMART ring_2 172 209 IPR001841 -
Vivi4g03931 227 ProSitePatterns Zinc finger RING-type signature. 187 196 IPR017907 -
Vivi4g03931 227 PANTHER ELFLESS, ISOFORM B 3 226 - -
Vivi4g03931 227 ProSiteProfiles Zinc finger RING-type profile. 172 210 IPR001841 -
Vivi4g03931 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 223 IPR013083 -
Vivi4g03931 227 Pfam Zinc finger, C3HC4 type (RING finger) 172 209 - -
Vivi4g03931 227 SUPERFAMILY RING/U-box 171 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03931 Vivi-Chr4 159916140 159917840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03931 6 226 C3H Transcription Factor Family AT5G48655 33.333 1.99e-25 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03931 K22651 - psat:127092874 266.929