Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03926 ATGGAAAAGGTAGCTCCTCCTCTTCTTCCTCTTCCACATCCATTTTACGATTCATCAAATAACAAAAAACGCGATCTATCATACGACGTCGTTCACCTACCAAACGACAATTGGAACCCTAAAGAATGGAATTGGGACAGCGTTCGATTCATGGCCAAATCCACCGTCTCACAACAGCAACCGGAGGAAGCTCTCAAATTGAATCTCGCCGGCGGTGGTTTTTCCGGCGGTGGTGTTACAAATAGAGCTAACAAAAGAGTACGTTCAGGATCTCCGTCCGGAGCGGCGTCGTATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTGTCGAAAGCGAAGGATTATCATCGAAGGCATAAAGTGTGTGAAGCTCATAGTAAAGCTTCGAAGGCTTTGCTTGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCTTTGCTGGAGTTTGATGAAGGGAAACGGAGCTGTCGTCGGAGACTTGCTGGACATAATCGGCGCCGGAGAAAGACGCAGCCGGATGAGGTGGTTTCTCCGCCGTTGAATCAGCATGTTGCGGCTGCTGCTAACTTGGAAATCTTTAACTTGTTGACTGCTATTGCTGATGGTTCGCAAGGAAAATTTGAAGAAAGAAGGTCACAAGTTCCTGATAAAGAGCATCTTGCACAGATTCTGAATAGGATCCCTTTACCTGCTGATCTTACAGCAAAGTTGCTGGATGTTGGCCATAACTTGAATGGGAAAAATAATAACATGCAAATGCAAACTTCACCGTCCTATCATCATCGTGAGGGTCAACCTAACAATGTCCCCTCTGCCCCATTAACCATGGACTTACTTGGTGTTCTTTCCACGACTCAATCGACACCTGTTCAAAATGCCATTTCATTACATTCTCAAAATGGTGGCAATAGATCCACGACTAGTGCTGATCAGATTAGAGAACAACAATTCACTTCAGTTGGTGGAGAAAGAAGCAGCGGAAGTTCCCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTCGAGTGAATTTGCCGCTGCAACTTTTTAACTCCTCTCCAGAAGATGACTTCCGATCAAAATTGCCATCTTCGCGAAAATATTTCTCATCAGAAAGTAGTAACCCTGTGGACGAGAGGTCACCGTCGTCATCTCCTCCTGTTGTGGAGATGAATTTCGGTTTGCAAGGTGGGATTAGAAGTGTCAATCCTAATAGCAATTCAACTGGAGTAGGAGTCAATGCAATTAAGGAAACTAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAATGTTATCCAACAAGCTAGTTCAGTTCAAAGTGTCCCATTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACTGGAAGAATAATGTTTAAATTATTTGACAAGCATCCTAGCCATTTCCCAGGAACGTTGCGCACACAGATATACAATTGGCTGTCTACTCGACCATCAGACTTGGAGAGTTACATAAGGCCTGGCTGCGTTGTCCTATCAATTTATGCAACTATGTCTTCTGCTGCCTGGGTGCAACTAGAAGAAAACTTCCTCCTACATGTTCATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGTAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCATACAAAGATGGAAAGATACGCATGTGCAAACCATGGGGAACATGGAGGTCTCCAGAGTTGACGTCAGTGTCCCCTTTGGCAATTGTTAGTGGACAAGAAACCTCTATGTCATTGAAGGGAAGAAACCTGTCTGCTTCTGGCACAAACATTCATTGCACTGAGGCTGACTGTTCCTTGTCATCAGAAGTTATAGGATCTGTAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGTGGTTTTAAAGTTCAGAATACATCTCCTGGTGTTCTAGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGCAACTGTTTTCCAGTGATAATAGCCGATGCATCCATTTGCAAGGAATTGAGACCGCTTGAGTCTGAATTTGACGAGGAGGAAAAAACATGTGATGCCATTTCGGAGGAGCATGAATATCATTTTGGGCGGCCCAAGTCAAGGGATGAGGCTCTGCACTTTCTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTGTCGAATGTGCACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGACATTTTCTGTGGAAAGAAACTGTTGCATGATAGTCAAAACCCTTTTGGATATGTTGGTTGATAAACACTATGAAGGAGAAAGTTTGTCAAAAGGGTCAATGGAGATGCTTAAAGCAATCCAACTCCTAAATAGAGCAGTGAAAAGAAAGTACATAAGCATGGTTGATTTACTCGTCCATTATTCTATACCTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCAAATCTTGAGGGACCTGGTGGTATTACTCCCTTGCATTTAGCAGCATCTACATTGGATTCTGATGGTGTCATTGACTCTTTGACAAATGATCCACAAGAGATTGGGCTGAAGTGCTGGGAGACCCTTATGGATGAAAACGGGCAGACTCCACACTCATATGCCATAATGAGAAATAATCAGTCTTACAATATGTTGGTTGCCCGGAAACTTTCTGATAGACAAAGAAGTGAAGTTGCAGTTAAAATTGATAACGAGATAGAGGTCCAATCACTGGGAATTGAGCTTATGCTAAAGCAAATTAACGAAGTCAAACGGGTTGGGAACTCTTGTTCCAAGTGTGCAATTGCCGATGTTCGCTTCAAGAGAAGATTTTCAGGTTCACGGAACTGGCTTCACGGTCCCTTTATTCATTCAATGCTAGCTGTTGCTGCTGTTTGCGTTTGTGTTTGTGTGTTATTCCGGGGAACCCCTTTTGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGGAGTACGGCACAATTTAA 3054 0.4273 MEKVAPPLLPLPHPFYDSSNNKKRDLSYDVVHLPNDNWNPKEWNWDSVRFMAKSTVSQQQPEEALKLNLAGGGFSGGGVTNRANKRVRSGSPSGAASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQPDEVVSPPLNQHVAAAANLEIFNLLTAIADGSQGKFEERRSQVPDKEHLAQILNRIPLPADLTAKLLDVGHNLNGKNNNMQMQTSPSYHHREGQPNNVPSAPLTMDLLGVLSTTQSTPVQNAISLHSQNGGNRSTTSADQIREQQFTSVGGERSSGSSQSPNDDSDCQEDVRVNLPLQLFNSSPEDDFRSKLPSSRKYFSSESSNPVDERSPSSSPPVVEMNFGLQGGIRSVNPNSNSTGVGVNAIKETSQSHSCTTIPLDLFKGSKSNNVIQQASSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYATMSSAAWVQLEENFLLHVHSLIHNSDSDFWRNGRFLVYSGSQLASYKDGKIRMCKPWGTWRSPELTSVSPLAIVSGQETSMSLKGRNLSASGTNIHCTEADCSLSSEVIGSVDPGMVYDEIKLSGFKVQNTSPGVLGRCFIEVENGFKGNCFPVIIADASICKELRPLESEFDEEEKTCDAISEEHEYHFGRPKSRDEALHFLNELGWLFQRERLSNVHEVPDYSLDRFKFVLTFSVERNCCMIVKTLLDMLVDKHYEGESLSKGSMEMLKAIQLLNRAVKRKYISMVDLLVHYSIPSKNDTSKKYVFPPNLEGPGGITPLHLAASTLDSDGVIDSLTNDPQEIGLKCWETLMDENGQTPHSYAIMRNNQSYNMLVARKLSDRQRSEVAVKIDNEIEVQSLGIELMLKQINEVKRVGNSCSKCAIADVRFKRRFSGSRNWLHGPFIHSMLAVAAVCVCVCVLFRGTPFVGSVSPFRWENLEYGTI 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03926 1017 ProSiteProfiles Zinc finger SBP-type profile. 98 175 IPR004333 GO:0003677
Vivi4g03926 1017 MobiDBLite consensus disorder prediction 322 397 - -
Vivi4g03926 1017 Pfam SBP domain 101 174 IPR004333 GO:0003677
Vivi4g03926 1017 MobiDBLite consensus disorder prediction 322 340 - -
Vivi4g03926 1017 SUPERFAMILY Ankyrin repeat 765 904 IPR036770 -
Vivi4g03926 1017 MobiDBLite consensus disorder prediction 351 396 - -
Vivi4g03926 1017 Gene3D - 92 162 IPR036893 GO:0003677|GO:0005634
Vivi4g03926 1017 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 41 799 IPR044817 GO:0003677
Vivi4g03926 1017 FunFam Squamosa promoter-binding-like protein 14 93 162 - -
Vivi4g03926 1017 Gene3D - 760 944 IPR036770 -
Vivi4g03926 1017 MobiDBLite consensus disorder prediction 252 279 - -
Vivi4g03926 1017 SUPERFAMILY SBT domain 99 180 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03926 Vivi-Chr4 159707729 159713438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03926 3 1017 SBP-box Gene Family AT1G20980 50.794 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi4g03926 SBP 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03926 - - gmx:100819004 1401.73