Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03920 ATGGCAGCTTCATTTTCAGCAGCATCTTTCTTTACAATCCCAGAAGAGAATCAGAATGAGATGAATCAACAAAATTCATCATCATCAACAACTCCACCTGCACCACCACCTCAGAAGAAAAGAAGAAACCAACCTGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCAAGGAGCCTAATGGCAACAAACAGATTTGTATGTGAGGTGTGTCAAAAAGGGTTTCAAAGAGAGCAAAATTTGCAACTTCATAGAAGAGGACACAATCTACCTTGGAAGCTAAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCTTCTTGTGTTCATCATGACCCTTCTAGAGCTCTTGGAGACCTAACTGGAATCAAGAAGCACTTTTCTAGGAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGGACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCAAGAAGAGACAGTTTCATCACACATAGAGCCTTTTGTGATGCACTTGCTCAAGAAAGTTCAAGACAACCACAATTACCAACCTTAATCACCAACACTTCCATTAACAACTCCCAATTATTTGGAAACATTAGCAACAACAATATGTCATTAGCCTTATCTCAAATTCCTCAACAACAGATCTCATCAACTCATAACCAAAACGACACCAACCAATCCACTGAAATCTTGCGTTTTGGCAACCATAACATTCTATCCCCACCCCCACAACATCCTCTTCACACCCCTCCATTTAACTTCATCACACAACCACCAAACCAAAATTTCCATCATCATGATCAACAATCTCAAACATTCCAAGGACTAATATCATTGTCTGAACTCAACAATAACAATTTGTTTTCTGAAAATTTCAACCATGAAGAGTTCTTTTCTCAAAATCCATTAATGTGTGATCATAATAATAACCAAACAAATCCTATCTCACCTCACATGTCAGCTACAGCACTTCTTCAAAAAGCTTCTCAAATGGGTGCAACATCAAGCACAAACAACAACAATAACACTAGTGCTTCTTCATTACTAAGAAGCTATGGCAGTTCATCTTCTTCTTCTTCTCTAGCAACAAAGGTTAATGGTGGTGATGGACTCACTAGAGATTTTCTTGGAGTTGGTCAAATAGTAATGAGAAACATGAATGGAGGAGTTTCACAAAGAGAGCAAAGAAACTTCAACGTGGAAGCTGAGAAAAACGCTGCAGCGTTTGGTAGTGGAGGGAACTTTGAGTGA 1326 0.3929 MAASFSAASFFTIPEENQNEMNQQNSSSSTTPPAPPPQKKRRNQPGTPYPDAEVIALSPRSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSRQPQLPTLITNTSINNSQLFGNISNNNMSLALSQIPQQQISSTHNQNDTNQSTEILRFGNHNILSPPPQHPLHTPPFNFITQPPNQNFHHHDQQSQTFQGLISLSELNNNNLFSENFNHEEFFSQNPLMCDHNNNQTNPISPHMSATALLQKASQMGATSSTNNNNNTSASSLLRSYGSSSSSSSLATKVNGGDGLTRDFLGVGQIVMRNMNGGVSQREQRNFNVEAEKNAAAFGSGGNFE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03920 441 MobiDBLite consensus disorder prediction 1 52 - -
Vivi4g03920 441 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Vivi4g03920 441 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vivi4g03920 441 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 416 IPR031140 -
Vivi4g03920 441 MobiDBLite consensus disorder prediction 1 29 - -
Vivi4g03920 441 SMART c2h2final6 68 90 IPR013087 -
Vivi4g03920 441 SMART c2h2final6 109 139 IPR013087 -
Vivi4g03920 441 SMART c2h2final6 144 164 IPR013087 -
Vivi4g03920 441 FunFam protein indeterminate-domain 12-like 47 115 - -
Vivi4g03920 441 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Vivi4g03920 441 Gene3D Classic Zinc Finger 51 116 - -
Vivi4g03920 441 Gene3D Classic Zinc Finger 122 201 - -
Vivi4g03920 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vivi4g03920 441 MobiDBLite consensus disorder prediction 353 391 - -
Vivi4g03920 441 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03920 Vivi-Chr4 159565067 159571399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03920 38 203 IDZ Gene Family AT2G02070 89.759 1.01e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g03920 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03920 K25870 - gmx:100807789 424.091