Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03917 ATGGCTGCTTCTTCATCCTCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATAACACAACAACATCAATCTTCTACCGACGTTTCATCAACCGCTGCTCAACCTTTAGTGCCGAAAAAAAGAAGAAATCAACCAGGAACACCATATCCAGATGCAGAAGTGATAGCACTATCTCCAAAGACACTAATGGCAACAAATAGATTTGTATGTGAGGTGTGTCAAAAAGGGTTTCAAAGAGAGCAAAATTTGCAACTTCATAGAAGAGGACACAATCTACCTTGGAAGCTAAAGCAAAAGAGCAACAAAGAGCCAAAGAGAAAGGTCTATCTATGTCCAGAGCCTTCTTGTGTTCATCATGACCCTTCTAGAGCTCTTGGAGACCTCACTGGAATCAAGAAGCACTTTTCTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGAACTAGAGAGTATAGATGTGATTGTGGCACTCTCTTCTCAAGGCGTGATAGTTTCATCACACATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGGCACCCTTCCAACATGAACCCTTTAGCAACTCATCTATTTTCCACAAACCACATGGGTTTAGCCCTAAACCAAAACCAACAAACATCCACAAACAACATCTTAACCCTAGGCAACATTCCTTGTACACCAAAATATGAAAATCATTTGATCTCACCTTTGCATCCATCATCATCATCATTATCATTTGTTCAACAACAACAACAACAACAATCACCACAACAACAATCAATGTCTTCGTCACCTTTCTTCATGACCGATCCAAATCAAACTTTCCAGCAAGACCTTTCTTCACCATTCTCAAACAAGCAACTTCATCTTCATCACGGTCTCTTGCAACTTCCCGATCTTCAAGGAAATACCAATAACAACACAACTTCTTCATCGGTATCGCCTTTTAACCTAAGTTTCTTCCCAAATACCAATAGTAGCACATTGCATGATCAGTTCAATAACATAAGTGAACCTCATCATCATCATCATCATCAGCATCAAGAAGGTTTTTCTTCACTCTTCGGTAACTCATCAATGCAACAAGAGAACATGTTGTCTTCACCACACATGTCAGCAACTGCATTGCTTCAAAAAGCTGCTCAAATAGGTTCAACCACAACAACAACTATCAATAACAACGGTGTCGAATCTAATAATGAAGGATTAAGATCAAGCATGGAAAATGAACAAAATCAACATCTACATGGTTTACTGAACTCTCTTGGGAATGGAAACACTTCAATATATGGAAATATGAATCATGACAACAACATTAACCTTGGTCAGTTTCAGAACATGGAGGAGAATAAGAAGATGCCACAACAAAATCTAGCTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTGGTGGATTTTCACAAAGAGAACAGCAACTACACTCCATGAGTAGTATGAACAACATGGATCCTAAATTGGAATCAACACAAGCAAACCAACCTTTTTGA 1614 0.386 MAASSSSTPFLEIRQENQSQITQQHQSSTDVSSTAAQPLVPKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMGLALNQNQQTSTNNILTLGNIPCTPKYENHLISPLHPSSSSLSFVQQQQQQQSPQQQSMSSSPFFMTDPNQTFQQDLSSPFSNKQLHLHHGLLQLPDLQGNTNNNTTSSSVSPFNLSFFPNTNSSTLHDQFNNISEPHHHHHHQHQEGFSSLFGNSSMQQENMLSSPHMSATALLQKAAQIGSTTTTTINNNGVESNNEGLRSSMENEQNQHLHGLLNSLGNGNTSIYGNMNHDNNINLGQFQNMEENKKMPQQNLAGNLCFGGSDKLTLDFLGVGGMVRNMSGGFSQREQQLHSMSSMNNMDPKLESTQANQPF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03917 537 SMART c2h2final6 147 167 IPR013087 -
Vivi4g03917 537 SMART c2h2final6 71 93 IPR013087 -
Vivi4g03917 537 SMART c2h2final6 112 142 IPR013087 -
Vivi4g03917 537 MobiDBLite consensus disorder prediction 1 54 - -
Vivi4g03917 537 FunFam protein indeterminate-domain 12-like 50 118 - -
Vivi4g03917 537 MobiDBLite consensus disorder prediction 260 300 - -
Vivi4g03917 537 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Vivi4g03917 537 MobiDBLite consensus disorder prediction 406 431 - -
Vivi4g03917 537 Gene3D Classic Zinc Finger 125 204 - -
Vivi4g03917 537 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Vivi4g03917 537 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vivi4g03917 537 Coils Coil 413 433 - -
Vivi4g03917 537 Gene3D Classic Zinc Finger 54 119 - -
Vivi4g03917 537 MobiDBLite consensus disorder prediction 510 537 - -
Vivi4g03917 537 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vivi4g03917 537 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vivi4g03917 537 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 520 IPR031140 -
Vivi4g03917 537 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03917 Vivi-Chr4 159526418 159530803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03917 42 217 IDZ Gene Family AT2G02070 86.932 9.45e-114 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g03917 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03917 K25870 - gmx:100806198 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03917 4 159526418 159530803 Vivi4g03917 4 159526418 159530803 ECH