Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03914 ATGAAACCCGAACTCTACGAAATCTCCGACGACGAATGGGAAAACCACACTTTCAAACCCTCTCGCGTCCTCAAACGACCTCGCTCTCCACCGCCGCCTCTCGAATCCTTCGCTTATAAACCTCCTTCTCAAACCGTTTCCTCCTCCGACGATGACGATTGCGTCGAAATCAATGGAACCACCGCTAATACCTCTGAATGCCTCGATGACTTAGAGGATGCTGACGTCGACGAGAGGAAAACAGTTCCCTCCACGACGACGACTCGTCGGAGGTTTATAATCGATGATGACGAGGATGAGTTTGGCGGAGGGAATGGGAATGGAGATGATGTTGATTTGTTTGAGATTGATTCGACTGAGGATGAGATTGAAATTGAAGAAGAAAACGAAGATGATTTGGTTGGTAGGGCTTTGCAGAAGTGTGCTAGAATTTCTGTGGAGTTGAAAGGTGAGCTGTTTGGTTCTTCTGGAGTTGCTTGTGATAGGTATTCGGAGGTGGAATCTTGTTCAGTCAGAATCGTTACTCAGGATGATGTTGACGTTGCCTGTGGGTCTGAGGATTCGGATTTTCAACCTCTGTTAAAGCCGTATCAACTGGTTGGTGTCAATTTCTTGCTTCTGCTGTATCGGAAGGGTATTGCAGGAGCCATATTGGCAGATGAAATGGGGCTTGGCAAAACGGTTCAGGCCATCACATATTTGACTTTGTTGAATCACTTGCACAACGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGGTGGTGCCCGTCCATTTCTGTTCTTCAATATCACGGGGCTGCTCGCACAGCATACTGCAAGGAGTTAAACTCCTTATCCAAGGCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTCGAACGACACAGTCCACAGCAGAAGGATGATCGTAAAATCCTGAAGCGTTGGAAGTGGAGCTGTGTACTGATGGATGAGGCACATGCTTTAAAGGACAAAAATAGCTTTAGGTGGAAAAATTTGATGTCTGTTGCTCGAAATGCGAACCAACGCTTGATGCTGACAGGGACACCTCTTCAAAATGACTTACATGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGATTTAAAAAAGTTACTAAGTGCTGAAGATACAGATTTAATTAGTCGTATGAAGTCTATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTCATGCAGCAACTTGTTCAAAAATCACAGCAGGTTGAATATGTCATGATGGTAAAGCAACAGGAACATGCATACAGGGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGGTTAACAAAATGTTCTGATCTGAACTCAAAAAATGTTCTTGAACTTCTTCCTCGACGACAAATAAATAATTATTTTGTTCAGTTTCGCAAGATTGCCAACCATCCCTTGTTGATAAGGCGAATTTATAATGAAGAGGATGTTGTTCGCTTTGCTAGGAAGCTACATCCATTGGGTGCTTTTGGCTTTGAATGTACTATGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGACTTCTCCATTCACCGGCTTTTACTTCATTATCGTATCAATGATAAAAAGGGGATTCTTTCAGATAAGTACGTTATGCTTTCTGCAAAATGTCGGGCTCTATCAGAACTTCTTCCGTCACTAAAGAAGAATGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCCTTGGATGTTATTGGGCTGACCTACAAACGGCTTGATGGAAGCACACAGGTGGCAGAGAGGCAAACAATAGTCGACACATTCAATAATGATACTTCGATTTTTGCATGCTTGCTTTCCACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATAGACTGGTGACAAAGGGAACAGTTGATGAGAATGTGTACGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAGTCCATGGAAGATATCAAAGAAGGGGACATGCCTGAGAAGACAATGGGAGAGATATTGTCTGCAATTTTGTTAAAATATTGA 2235 0.4246 MKPELYEISDDEWENHTFKPSRVLKRPRSPPPPLESFAYKPPSQTVSSSDDDDCVEINGTTANTSECLDDLEDADVDERKTVPSTTTTRRRFIIDDDEDEFGGGNGNGDDVDLFEIDSTEDEIEIEEENEDDLVGRALQKCARISVELKGELFGSSGVACDRYSEVESCSVRIVTQDDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKRWCPSISVLQYHGAARTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDTDLISRMKSILGPFILRRLKSDVMQQLVQKSQQVEYVMMVKQQEHAYREAIEEYRAVSQARLTKCSDLNSKNVLELLPRRQINNYFVQFRKIANHPLLIRRIYNEEDVVRFARKLHPLGAFGFECTMDRVIEELKSYNDFSIHRLLLHYRINDKKGILSDKYVMLSAKCRALSELLPSLKKNGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESMEDIKEGDMPEKTMGEILSAILLKY 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03914 744 FunFam Protein CHROMATIN REMODELING 19 isoform A 165 443 - -
Vivi4g03914 744 CDD SF2_C_SNF 560 693 - -
Vivi4g03914 744 CDD DEXHc_Snf 194 387 - -
Vivi4g03914 744 PANTHER SNF2/RAD54 HELICASE FAMILY 127 719 - -
Vivi4g03914 744 SMART ultradead3 190 395 IPR014001 -
Vivi4g03914 744 MobiDBLite consensus disorder prediction 19 61 - -
Vivi4g03914 744 Coils Coil 116 136 - -
Vivi4g03914 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 724 IPR027417 -
Vivi4g03914 744 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 573 724 IPR001650 -
Vivi4g03914 744 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 385 IPR014001 -
Vivi4g03914 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 420 IPR027417 -
Vivi4g03914 744 MobiDBLite consensus disorder prediction 40 61 - -
Vivi4g03914 744 Pfam SNF2-related domain 213 500 IPR000330 GO:0005524|GO:0140658
Vivi4g03914 744 SMART helicmild6 599 682 IPR001650 -
Vivi4g03914 744 Pfam Helicase conserved C-terminal domain 570 682 IPR001650 -
Vivi4g03914 744 Gene3D - 179 446 IPR038718 -
Vivi4g03914 744 Gene3D - 549 738 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03914 Vivi-Chr4 159470427 159482786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03914 215 721 RAD5 or RAD16-like Gene Family AT5G22750 26.677 2.21e-45 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi4g03914 SNF2_N 6.8e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03914 K14439 - gmx:100806323 1226.46