Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03913 ATGGGGAGGATCAAGCCTCAAGTTTTGTTGCAACAAAGCAAAAGAAAGAAGGGACCTTATCACATGAATCCAATGTCTATGGTGTTTTACTCTCTAACTCTTGTCGTATTTGTGTTTTTCCTCTTTGCTACATTCAGATATTGGTCCATTCGACTCGAGAAGAAGCACGCATCAGTCTTTGAGAATGATAATCCTTCTGTGGAATCCAAGAAATCTGATCTACCTGGATATGCTGTTTTTAGAACCTCTAAAGGCTCTATAATAATGGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGATTTATGTCAAAAGGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTTATTCAAGCAAGTCATAACAAAGGGACAGGATCTACCGAAGATTGGAACCTGAGAGGGAAGAAATATACAAGTATGAAACACGAAGCGTTCATGCTTGGAACTTCCAAGGGCAAACACATCAACAAAGGATTCGATCTTTTCATCACAACCGCACCAATTCCTGATCTAAATGAGAAACTTATTATTTTCGGTCGGGTCGTAAAGGGAGAGGACGTAGTCCAGGAAATTGAAGAAGTGGATACTGATGAACACTATCAACCAAAACTTTCTATTGGTATAATTGATGTAGATCTTAGACAAATGATGTGA 684 0.386 MGRIKPQVLLQQSKRKKGPYHMNPMSMVFYSLTLVVFVFFLFATFRYWSIRLEKKHASVFENDNPSVESKKSDLPGYAVFRTSKGSIIMELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQASHNKGTGSTEDWNLRGKKYTSMKHEAFMLGTSKGKHINKGFDLFITTAPIPDLNEKLIIFGRVVKGEDVVQEIEEVDTDEHYQPKLSIGIIDVDLRQMM 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03913 227 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 74 223 IPR002130 GO:0000413|GO:0003755
Vivi4g03913 227 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 78 221 IPR002130 GO:0000413|GO:0003755
Vivi4g03913 227 CDD cyclophilin 79 220 - -
Vivi4g03913 227 SUPERFAMILY Cyclophilin-like 74 223 IPR029000 -
Vivi4g03913 227 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 226 - -
Vivi4g03913 227 Gene3D - 62 226 IPR029000 -
Vivi4g03913 227 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 182 IPR002130 GO:0000413|GO:0003755
Vivi4g03913 227 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 106 IPR002130 GO:0000413|GO:0003755
Vivi4g03913 227 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 IPR002130 GO:0000413|GO:0003755
Vivi4g03913 227 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03913 Vivi-Chr4 159446196 159448138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03913 76 223 U-box Gene Family AT5G67530 29.677 1.00e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03913 - - gmx:100796043 355.91