Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03912 ATGGATTCTCATAACCCAAACTTTACTACACCTCCACCTGGTTTCTCTGTCCCAGCTCCATTGCTAACTCCGGAGCAAGAGCCTCGTGACGAACCACCTCAACCAGAACAACATCAAGAACAACAACAACAGCAAGAACTAAACCTGAATGATCTTCCGGACTTCAATCATAATCTAAATCTTAACCTCAATGATATTTATGAAGAACAAACCCTACCCGAAGGGTTTTCCAACTTTAACCTTATTTCAGAGGCTTACGGAACCGAGTTCACTACATGTCTTCAACAACTTGAAAACGACGTTGTTGATGCTGTTGATGATCCTAATGGTCCTAATTCACGCGCCTTCGTTCCGGTTCTCGAGGCGCGTCTGCGTCAGTGTTACAACAACAGTGCTCTTCCGGGGGTGGGGGAAGTTGCGCCGCAGAGGCTTCAACAGCGACATAAGGAGCTTGTTCGTGTGATAGATTTTGGTTTAGCGGACCAACGTCAATTTCGGGACATGGTGAGAAGGACGAGGATGGTATATGATTCGCTTCGCGTTTTGGTGATTGATAAGGAGAAGAGAGGTGATGTTCGTAGATTGAGAAGCGATCTGAGAGCTTCTGCTTCGATGAGGGACAAGGGTTTGTGGCTGAATCGTGATAAGAGAATCGTTGGTCCCATTCCTGGTATTTGTATAGGTGACGTGTTTCTTTATAGAATGGAGTTGGTTGTGACTAGTTTACATGGTCATCCACAGGCTGGGATTGATTATTTGCCTGGTAGTATGAGTTCGAATGGCGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGATATGAGGATGACGTCGATCAAGGCGATGTTATTATCTATTCTGGTCATGGTGGTCAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGTTGGAAGGTGGGAACCTTGCGATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGCGGTGTTCGGTATGAGGGTTTGTCTTCTTCTTCTGGTAAGGTTTATGTTTATGATGGCTTGTATAGGATTGTTAAATATTGGTTTGATGTTGGTAAGTCTGGTTTTGGTGTTTATAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGCGTGATTCTTAAGGATGCTCTTATGCTGAGGAGGGATCCTTTGTTTTTTAAACCTATGTGTGTTTTTTCTCTTGATATTTCGAACCGGAACGAGAATGTTGGTGTGAGGCTTTTTAATGATATTGATAGGAGTAATGATCCGATGTGTTTTCAGTATCTTCCAAGGGCTACTTTTCCGCAATTTGTGTTTAATCACAGTGGGAGGGTGACAGGTTGTGATTGCGTGAACGGTTGCGTCGAAGGATGCCCTTGTTTCATGAAGAACAGAAAAGTGTTTCCTTATAGTCAAAGTGGGCTTCTCTTGAAAGGGAGACCGTTAATCTTTGAATGTGGTCCTTTTTGTAGATGTCCACCTCATTGTCGTAACCGTGTTACGCAAAAAGGGTTGAAAAATAGGTTGGAAGTGTTTAGATCTAAGGAGACTGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAAGCTGGCGCTTTTATATGTGAATACACCGGGGTTGTTTTGACTAGGGAGCAGGCACATATTTTGATCATGAATGGTGATTCATTGATATATCCCAATCGGTTTTCGAATAGGTGGGAAGATTGGGGTGATTTATCTCTTGTAAACCCTAATTATGAGCGTCGGACGTATCCACCAGTTCCTCCTTTAGATTTTGCTCTGGATGTGTCAAAAATGAGGAATGTTGCTTGCTACATGAGTCATAGCTCAACTCCTAATGTGTTGGTTCAGTTTGTTCTATATGATCACAATAATTTGATGTTCCCTCACCTTATGCTTTTTGCTATGGAAAACATCCCTCCGATGAGAGAGTTAAACCTTGATTATGGAGTAACTGATGACGAGCTGACTGACAAGCTCGATATATGTAACTGA 2001 0.4263 MDSHNPNFTTPPPGFSVPAPLLTPEQEPRDEPPQPEQHQEQQQQQELNLNDLPDFNHNLNLNLNDIYEEQTLPEGFSNFNLISEAYGTEFTTCLQQLENDVVDAVDDPNGPNSRAFVPVLEARLRQCYNNSALPGVGEVAPQRLQQRHKELVRVIDFGLADQRQFRDMVRRTRMVYDSLRVLVIDKEKRGDVRRLRSDLRASASMRDKGLWLNRDKRIVGPIPGICIGDVFLYRMELVVTSLHGHPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDQGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGLSSSSGKVYVYDGLYRIVKYWFDVGKSGFGVYKFKLWRIDGQAKMGSVILKDALMLRRDPLFFKPMCVFSLDISNRNENVGVRLFNDIDRSNDPMCFQYLPRATFPQFVFNHSGRVTGCDCVNGCVEGCPCFMKNRKVFPYSQSGLLLKGRPLIFECGPFCRCPPHCRNRVTQKGLKNRLEVFRSKETGWGVRSLDLIQAGAFICEYTGVVLTREQAHILIMNGDSLIYPNRFSNRWEDWGDLSLVNPNYERRTYPPVPPLDFALDVSKMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELNLDYGVTDDELTDKLDICN 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03912 666 ProSiteProfiles Pre-SET domain profile. 448 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03912 666 Gene3D - 201 381 IPR036987 -
Vivi4g03912 666 Gene3D SET domain 382 665 IPR046341 -
Vivi4g03912 666 SUPERFAMILY PUA domain-like 202 382 IPR015947 -
Vivi4g03912 666 SMART G9a_1 215 373 IPR003105 -
Vivi4g03912 666 SMART set_7 509 658 IPR001214 GO:0005515
Vivi4g03912 666 SUPERFAMILY SET domain 393 655 IPR046341 -
Vivi4g03912 666 ProSiteProfiles SET domain profile. 509 652 IPR001214 GO:0005515
Vivi4g03912 666 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 61 665 IPR025794 GO:0016571
Vivi4g03912 666 Pfam SAD/SRA domain 219 373 IPR003105 -
Vivi4g03912 666 Pfam SET domain 520 652 IPR001214 GO:0005515
Vivi4g03912 666 Pfam Pre-SET motif 404 501 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03912 666 ProSiteProfiles YDG domain profile. 220 369 IPR003105 -
Vivi4g03912 666 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 74 653 - -
Vivi4g03912 666 MobiDBLite consensus disorder prediction 1 45 - -
Vivi4g03912 666 SMART preset_2 401 493 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03912 Vivi-Chr4 159427788 159430085 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03912 166 654 Su(var)3-9 homologs AT5G04940 37.052 4.80e-96 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi4g03912 SAD_SRA 2.2e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03912 K11420 - gmx:100804592 869.766