Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03910 ATGGATTCTCAAAACCTTACTACACCTCCACCTGGCTTCTCTGGCTCAGCTCCATTGCTAACTCCGAAGCAAGAGCCTTGTGACGAACCACCTCAACAGGAACAACATCAACAACAACAACCACAGCAAGAACCAAACCTGAATGATGTTCTGAACCTCAATCTTAACCTAAATCCTAACCTTGATGATATTGATGAAGAACAAATCCTATCCGAAGGGTTTTCCAACTTTAACCTTATCTCAGAGGCTTACCAAACCGGGCTCACTACAGGTATTCAACAACTCGAAAACGACATCGTTGATGTTGTTGATGATGCTTATGATCCTAATTCACGCGCCATCGCTCCGGTTCCGATTCCCGAGGTGCGTCAGAGTTACAACAACAATGCTCCGGGGGATGGGGAAGTTGCGGCGCAGAGGATTCAACGGCGTCATAAGGAGCTTGTTCGTGTGACGGATCTTGATTTAGCGGACCAGCGTCAGTTTCGGGACATGGTGAGAAGGACGAGGATGGTTTATGATTCGCTTCGCGTTTCGGCTTTGATTAAAGAGGAGAAGAGAGGTGATGTTCGTAGACTGAGAAGCGATCTTAAAGCCTCTGCTTTGATGAGGACCAGGGATTTGTGGCTGAATCGCGATAAGAGAATTGTTGGTCCGATTCCGGGTATTTTTATAGGTGATGTGTTTCTTTATAGAATGGAGTTAGTTGTGATTGGTTTACATGGTCAATCGCAAGCCGGAATTGATTATTTGCCTGGTAGTATGAGTTCAAATGGCGAACCGCTTGCTACTAGTGTGATTGTTTCTGGTGGATATGAGGATGACGTCGATAAAGGCGATGTTATTATCTATTCTGGTCATGGTGGTCAGGATAAGAATTTGAGGCAGGTTTTTCATCAGAAGTTGGAAGGCGGGAACCTTGCGATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGCGGTGTTCGGGTTGAGGGTTCATCTTCTGCTTCTGGTAAGGTTTATGTTTATGATGGCTTGTATAGGATTGTTGAATATTGGTTTGATGTTGGTAAGTCTGGTTTTGGTGTTTATAAGTTTAAGTTATGGAGGATTGCTGGTCAAGCTAAGATGGGTAGTGTGATTCTTAAGGATGCTCTGATGTTGAGGAGGGATCCTTTGTTTTTTAAACCTATGTGGGTTTTTTCTCTTGATATTTCGAATCGGAGCGAAAACGTTAGTGTGAGGCTTTTTAATGATATTGATAGGATTAATGATCCGATGTGTTTTCAGTATCTTCCAAGGGCTATGTTTCCGTCGTTTGTGTTTCATCACAATGAGAGGGTGATGGGTTGTGAGTGCGTGAATGGTTGCGTCGAAGGATGCTTTTGTTTCAAGAAGAATGGAAATGAGTTTCCTTATAGTCAAAGTGGGCTTCTCTTGAAAGGAAGACCGTTAGTCTTTGAATGCGGTCCTTTTTGTAGATGCCCGCCTCATTGTCCTAATCGTGTTACACAAAAAGGGCTGAAAAATAGGTTGGAAGTGTTTAGATCTAAGGAGACTGGTTGGGGAGTCAGGTCTTTAGATCTTATTCAAGCTGGCGCTTTTATCTGTGAATACACCGGGGTTGTTTTGACTAGGAAGCAAGCACAAATTTTGATCATGAATGGTGATTCATTGATATATCCGAATCGGTTTTCAAATAGGTGGGAAGAATGGGGGGATTTATCTCTGGTAAACCCTAGTTATAAGCGCCCGACGTATCCATCAAATCCTCCTTTAAATTTTGCTCTAGATGTGTCAAAAATGAGGAATGTTGCTTGCTACATGAGTCATAGCTCAACTCCCAATGTGTTGGTTCAGTTTGTTCTATATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCGATGAGAGAGTTCAGCCTTGATTATGGAGTAACTGATGACGAGTTGACTGGTAAGCTCGCTATATGTAATTGA 1995 0.4271 MDSQNLTTPPPGFSGSAPLLTPKQEPCDEPPQQEQHQQQQPQQEPNLNDVLNLNLNLNPNLDDIDEEQILSEGFSNFNLISEAYQTGLTTGIQQLENDIVDVVDDAYDPNSRAIAPVPIPEVRQSYNNNAPGDGEVAAQRIQRRHKELVRVTDLDLADQRQFRDMVRRTRMVYDSLRVSALIKEEKRGDVRRLRSDLKASALMRTRDLWLNRDKRIVGPIPGIFIGDVFLYRMELVVIGLHGQSQAGIDYLPGSMSSNGEPLATSVIVSGGYEDDVDKGDVIIYSGHGGQDKNLRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRVEGSSSASGKVYVYDGLYRIVEYWFDVGKSGFGVYKFKLWRIAGQAKMGSVILKDALMLRRDPLFFKPMWVFSLDISNRSENVSVRLFNDIDRINDPMCFQYLPRAMFPSFVFHHNERVMGCECVNGCVEGCFCFKKNGNEFPYSQSGLLLKGRPLVFECGPFCRCPPHCPNRVTQKGLKNRLEVFRSKETGWGVRSLDLIQAGAFICEYTGVVLTRKQAQILIMNGDSLIYPNRFSNRWEEWGDLSLVNPSYKRPTYPSNPPLNFALDVSKMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMREFSLDYGVTDDELTGKLAICN 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03910 664 SMART preset_2 399 491 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03910 664 SUPERFAMILY PUA domain-like 199 380 IPR015947 -
Vivi4g03910 664 Pfam SET domain 518 650 IPR001214 GO:0005515
Vivi4g03910 664 Pfam Pre-SET motif 402 499 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03910 664 SMART G9a_1 213 371 IPR003105 -
Vivi4g03910 664 SMART set_7 507 656 IPR001214 GO:0005515
Vivi4g03910 664 ProSiteProfiles YDG domain profile. 218 367 IPR003105 -
Vivi4g03910 664 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 109 651 - -
Vivi4g03910 664 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 59 664 IPR025794 GO:0016571
Vivi4g03910 664 SUPERFAMILY SET domain 390 653 IPR046341 -
Vivi4g03910 664 Gene3D - 199 379 IPR036987 -
Vivi4g03910 664 Gene3D SET domain 380 663 IPR046341 -
Vivi4g03910 664 MobiDBLite consensus disorder prediction 1 43 - -
Vivi4g03910 664 ProSiteProfiles SET domain profile. 507 650 IPR001214 GO:0005515
Vivi4g03910 664 Pfam SAD/SRA domain 217 371 IPR003105 -
Vivi4g03910 664 ProSiteProfiles Pre-SET domain profile. 446 504 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03910 Vivi-Chr4 159371061 159373963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03910 127 652 Su(var)3-9 homologs AT5G04940 36.280 4.72e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi4g03910 SAD_SRA 7.3e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03910 K11420 - gmx:100804592 853.588