Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03905 ATGGATTCTCAAAACCCTGACCTTACTACACCTCCACCTGGCTTCTCTGGCTCAGCTCCATTGCTAACTCCGAAGCAAGAGCCTTGTGACGAACCACCTCAACAGGAACAACATCAACAACAACAACCACAGCAAGAACCAAACCTGAATGATGTTCTGAACCTCAATCTTAACCTAAATCTTAACCTTGATGATATTGATGAAGAACAAATCCTATCCGAAGGGTTTTCCAACTTTAACCTTATCTCAGAGGCTTACCAAACCGGGCTCACTACAGGTATTCAACAACTCGAAAACGACATCGTTGATGTTATTGATGATGCTTATGATCCTAATTCACGCGCCATCGTTCCGCTTCCGGTTCTGGTTCCCGAGGTGCGTCAGAGTTATGACAACAATGCTCCGGGGGATGGCGAAGTTGCGGCGCAGAGGATTCAACGGCGTCATAAGGAGCTTGTTCGTGTGGCGGATCTTGATTTAGCGGACCAGCGTCAGTTTCGGGACATGGTGAGAAGGACGAGGATGGTTTATGATTCGCTTCGCGTTTCGGCTTTGATTAAAGAGGAGAAGAGAGGTGATGTTCGTAGACTGAGAAACGATCTTAAAGCCTCTTCCTTGATGAGGACCAGCGATTTGTGGCTGAATCGTGATAAGAGAATTGTTGGTCCGATTCCGGGTATTTTTATAGGTGATGTGTTTCTTTATAGAATGGAGTTAGTTGTGATTGGTTTACATGGTCAACCGCAAGCCGGGATTGATTATTTGCCTGGTAGTATGAGTTGGAATGGCGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGATATGAGGATGACGTCGATCAAGGCGATGATATTATTTATTCTGGTCATGGTGGTCAGGATAAGAATTCGAGGCAGGTTTTTCATCAAAAGTTGGAAGGCGGGAACCTTGCGATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGCGGTGTTCGGGTTGAGGGTTCATCTTCTGCTTCTGGTAAGGTTTATGTGTATGATGGCTTGTATAGGATTGTTGAATATTGGTTTGATGTTGGTAAGTCTGGTTTTGGTGTTTATAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGCGTAGTGTGATTCTTAAGGATGCTCTAATGCTGAGGAGGGATCCTTTGTTTTTTAAACCTATGTGGGTTTTTTCTCTTGATATTTCGAATCGGAGCGAAAACGTTAGTGTGAGGCTTTTTAATGATATTGATAGGATTAATGATCCGATGTGTTTTCAGTATCTTCCAAGGTCTACTTTTCCGCAGTTTGTGTTTCATCACAGTGGGAGGGTGACGGGTTGTGAGTGTGTGAATGGTTGCGTCGAAGGATGCTTTTGTTTCAAGAAGAATGGAAATGAGTTTCCTTATAGTCAAAGTGGGCTTCTCTTGAAAGGAAGACCATTAGTCTTTGAATGCGGTCCTTTTTGTAGATGCCCGCCTCATTGTCGTAATCGTGTTACACAAAAAGGGCTGAAAAATAGGTTGGAAGTGTTTAGATCTAAGGAGACTGGTTGGGGAGTCAGGTCTTTAGACCTTATTCAAGCTGGCGCTTTTATCTGTGAATACACCGGGGTTGTTTTGACAAGGGAGCAAGCACAAATTTTGATCATGAATGGTGATTCATTGATATATCCGAATCGGTTTTCAAATAGGTGGGAAGAATGA 1719 0.4322 MDSQNPDLTTPPPGFSGSAPLLTPKQEPCDEPPQQEQHQQQQPQQEPNLNDVLNLNLNLNLNLDDIDEEQILSEGFSNFNLISEAYQTGLTTGIQQLENDIVDVIDDAYDPNSRAIVPLPVLVPEVRQSYDNNAPGDGEVAAQRIQRRHKELVRVADLDLADQRQFRDMVRRTRMVYDSLRVSALIKEEKRGDVRRLRNDLKASSLMRTSDLWLNRDKRIVGPIPGIFIGDVFLYRMELVVIGLHGQPQAGIDYLPGSMSWNGEPIATSVIVSGGYEDDVDQGDDIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRVEGSSSASGKVYVYDGLYRIVEYWFDVGKSGFGVYKFKLWRIDGQAKMRSVILKDALMLRRDPLFFKPMWVFSLDISNRSENVSVRLFNDIDRINDPMCFQYLPRSTFPQFVFHHSGRVTGCECVNGCVEGCFCFKKNGNEFPYSQSGLLLKGRPLVFECGPFCRCPPHCRNRVTQKGLKNRLEVFRSKETGWGVRSLDLIQAGAFICEYTGVVLTREQAQILIMNGDSLIYPNRFSNRWEE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03905 572 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 131 566 - -
Vivi4g03905 572 Gene3D - 203 384 IPR036987 -
Vivi4g03905 572 Gene3D SET domain 385 572 IPR046341 -
Vivi4g03905 572 SUPERFAMILY PUA domain-like 203 384 IPR015947 -
Vivi4g03905 572 ProSiteProfiles Pre-SET domain profile. 450 508 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03905 572 SMART preset_2 403 495 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03905 572 SUPERFAMILY SET domain 394 556 IPR046341 -
Vivi4g03905 572 ProSiteProfiles SET domain profile. 511 572 IPR001214 GO:0005515
Vivi4g03905 572 SMART G9a_1 217 375 IPR003105 -
Vivi4g03905 572 MobiDBLite consensus disorder prediction 1 45 - -
Vivi4g03905 572 ProSiteProfiles YDG domain profile. 222 371 IPR003105 -
Vivi4g03905 572 Pfam Pre-SET motif 406 503 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03905 572 Pfam SAD/SRA domain 221 375 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03905 Vivi-Chr4 159311014 159314032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03905 75 544 Su(var)3-9 homologs AT1G73100 34.127 2.86e-83 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03905 K11420 - gmx:100804592 705.671