Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03902 ATGTCCATCACTTGTATCCCAAGAAATACCGATACTATCCGTTTCTTCAAGATTGTTACTTCAACAAATATTCAAGATGGAAACATTAGAATTCCAAATGCTTTCACTCAGAAATATATTGGTAATTTATCAAACATAATGTTTCTCAAGACTCCGGATAACAAAAAATGGGAAATACATTTGACTAAAAAGGAATCTGATATTTGGATTCACAAGGGTTGGAAGGAATTTGCGACACATTACTCATTAGATCACGGACATATGCTAATATTTCAATATGAGAAAACCTCTCATTTTGAAGTGCATATATTCGACAAGAGTACCCTTGAAATTGAATATCCTGTTTATGGTAAAAATCAACAAGAACATAACAGCACAATTGAAAATTTGAATGAGCAACCTTCATGCAACAAAACTAAACCAAAACCACAAATTTCAAAAATTTCAAGTTCTCAACCGCATAAGAAATTGAGAATCGACACAACTGAAGAAGTTGGAACAAGTTCGAAATTGCAAAACTGGCCTAAACTTGTGCAAGTTAAAGACGAGAAGGACAGTTCTACCGAATGCATAAATGTGATGCATTATCCAGAGCAGAAGAATTTTACTTCTAAAATCGAAAAAGCTTTAACCAAAGCCAAAAACTACAAATCTCAAAATCCCCTTTTCATTGTTGTCATGACTTCTTCCTATAGTAATCAATACATGTGTGTCCCTTTTGATTTCGAACAAAAGTATTTGAAGAAAGATCAAAGCGATATGGTCCTTCGGGTCATGGACGACGATAGAACTTGGATTGTTAAATATAGTGAAAGAAGAATTAGTTCTGGATGGAGAACATTTGCATCTGATAATAATTTGAAAGTGGGGGATGTTTGTCTTTTCGAGATGATCAATTACGAAGCCTATGCTTTTAGAGTACTAGTTTTTCGAGTTGACGATGAACAATGTTCCCCTCCACCACGAGTTCATGAAGATCGTGTTAATTCGGTAAATATCGCAAGAATCTCAAAAGTTGAAAGTAAACCGATTATTTTACATAGAGGAATGAGAGCTACTCCAATAAACTCCTTGCGGGCTAGTCCATGCAACTTTGCGAAATTTGAAGTGAAACAATTCGCGTCCTCATTGAAAAATCCTAATTTCACTGTCAAGTTAAGATCAAATCATTGGAACGAATACAAACCGCGTATACCGAATTCGTTCTCAAGGAAGTACTTGTGTTACCAAAAGAAGACTGTGATGTTACAGTTTGATGAAAAAATCTGGCCGGTAGAATTGACGTGTTATCCATCCGATCTAACGAGAAAGTTGAGTGTAGGTTGGAGTCGGTTTGCAGAAGAAAATAAATTGCAGGTCGGAGATGTATGTGTATTCGAGCTCATCAACAAGGAAGATGCTGTGCTTGATGTTCGTATTTTCAGAGGCCGCAATTAG 1437 0.3591 MSITCIPRNTDTIRFFKIVTSTNIQDGNIRIPNAFTQKYIGNLSNIMFLKTPDNKKWEIHLTKKESDIWIHKGWKEFATHYSLDHGHMLIFQYEKTSHFEVHIFDKSTLEIEYPVYGKNQQEHNSTIENLNEQPSCNKTKPKPQISKISSSQPHKKLRIDTTEEVGTSSKLQNWPKLVQVKDEKDSSTECINVMHYPEQKNFTSKIEKALTKAKNYKSQNPLFIVVMTSSYSNQYMCVPFDFEQKYLKKDQSDMVLRVMDDDRTWIVKYSERRISSGWRTFASDNNLKVGDVCLFEMINYEAYAFRVLVFRVDDEQCSPPPRVHEDRVNSVNIARISKVESKPIILHRGMRATPINSLRASPCNFAKFEVKQFASSLKNPNFTVKLRSNHWNEYKPRIPNSFSRKYLCYQKKTVMLQFDEKIWPVELTCYPSDLTRKLSVGWSRFAEENKLQVGDVCVFELINKEDAVLDVRIFRGRN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03902 478 SUPERFAMILY DNA-binding pseudobarrel domain 375 475 IPR015300 -
Vivi4g03902 478 Gene3D - 365 477 IPR015300 -
Vivi4g03902 478 Gene3D - 203 315 IPR015300 -
Vivi4g03902 478 ProSiteProfiles B3 DNA-binding domain profile. 221 313 IPR003340 GO:0003677
Vivi4g03902 478 CDD B3_DNA 221 311 IPR003340 GO:0003677
Vivi4g03902 478 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 369 476 IPR044837 -
Vivi4g03902 478 Pfam B3 DNA binding domain 384 476 IPR003340 GO:0003677
Vivi4g03902 478 Pfam B3 DNA binding domain 223 311 IPR003340 GO:0003677
Vivi4g03902 478 Pfam B3 DNA binding domain 15 106 IPR003340 GO:0003677
Vivi4g03902 478 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Vivi4g03902 478 MobiDBLite consensus disorder prediction 131 159 - -
Vivi4g03902 478 CDD B3_DNA 14 105 IPR003340 GO:0003677
Vivi4g03902 478 SUPERFAMILY DNA-binding pseudobarrel domain 10 107 IPR015300 -
Vivi4g03902 478 CDD B3_DNA 380 475 IPR003340 GO:0003677
Vivi4g03902 478 ProSiteProfiles B3 DNA-binding domain profile. 381 477 IPR003340 GO:0003677
Vivi4g03902 478 SUPERFAMILY DNA-binding pseudobarrel domain 216 312 IPR015300 -
Vivi4g03902 478 SMART B3_2 381 477 IPR003340 GO:0003677
Vivi4g03902 478 SMART B3_2 223 313 IPR003340 GO:0003677
Vivi4g03902 478 SMART B3_2 15 107 IPR003340 GO:0003677
Vivi4g03902 478 Gene3D - 8 108 IPR015300 -
Vivi4g03902 478 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03902 Vivi-Chr4 159134863 159137655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03902 379 475 B3 DNA Binding Superfamily AT3G18990 40.816 3.23e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g03902 B3 3.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03902 - - tpra:123902302 641.728