Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03862 ATGTCTCCTCGCCCTACTTTTTGCAAGCTTATTCTTCCTACAACCCTTCAATCTAGGCAATTGAGGATTCCGGATAATTTTCTGAGAAAACATGGGGCGCAACTTTCGACTGCTGCCACCATCTCTGTTCCTGATGGCACTGTCTGGCGTCTAGGATTGAAAAAAATCGACAACAAACTTTGGTTCGTCGATGGCTGGCAAGATTTTGTTCAACGCTACTCCATTGGCATTGGATACTTTCTAGTATTCACGTATGAAGGGAATTCGTGTTTCGTCATTCATATCTTTAACATGGGTAGTGCTGAGCTAAATTATCAATCTGCAATGAGAGGCCGTAACGAAGGGCCTTGCTATTCAAATTATCATCCTCTTTTTAGCGAAATGGAAGATGTCGACTCTCTTGAGTTTCTGAGTCCGTCGCCTTCAAACCATAGTTCTGGTGTATTGCAAGAGAAGGTTTTCCCTGGATCTGTGGATCAACTAACACCAGGGAAGAATCATACTCCATCGTTGCATAATTTGTTTAATGGCGGGTCTAAACTCAACCGCGTTAACTGGGGAGATATTGATGGCACTCTTTCTTCAAAGGTTGCCATTCAGTCAACCAGAGATATAGGTGTTCAGTTCAATGCTAGTGAGTTCAAAAAGTCTACAGAAGAAGTGAAAATCCGCTATTCTAACGAGGAAGGGCTTAATAATAGTGATACTAAAAAGTCTTCAAGAAAGAAGCGGAAATCAGATCCGAGTGCACAGGAAGGCTCTTCTGCTGAAAATGAGGAGGACGCAGATTCGCGCTATCGATTCTATGAAAGTGCGTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGAATCTAAAACATTTGAACCAACTAATCCTTTCTGTCGAGTTGTGCTGCGACCCTCCTATTTATATAGAGGATGTATAATGTATTTGCCTTCCTCCTTTGCAGAAAACAATTTGAACGAAGTTTCAGGATTCATTAAACTTCTGGGCCCCACTGGGAAAGAATTTCCTGTTCGCTGTCTTTATAGAGGCGGCCGAGCAAAGTTAAGCCAAGGATGGTATGAATTTACAGTAGAGAACGGTTTAGGGGAAGGAGATGTCTGTGTTTTTGAGCTGCTTAGAAGCAGAGAGGTAGTGCTGAAAGTTACTTTGTTTCGTGTACGCGAGGATGAAACCGGGTTATTTGACCCTTCTACGCTGGTGAGCCAAAATGTGAGCCATGCAAAACTGCTGAACCCTCACTTGCAGCACCGGGTAGGCGTCACCAAACTGATTAAAAATTAG 1308 0.4289 MSPRPTFCKLILPTTLQSRQLRIPDNFLRKHGAQLSTAATISVPDGTVWRLGLKKIDNKLWFVDGWQDFVQRYSIGIGYFLVFTYEGNSCFVIHIFNMGSAELNYQSAMRGRNEGPCYSNYHPLFSEMEDVDSLEFLSPSPSNHSSGVLQEKVFPGSVDQLTPGKNHTPSLHNLFNGGSKLNRVNWGDIDGTLSSKVAIQSTRDIGVQFNASEFKKSTEEVKIRYSNEEGLNNSDTKKSSRKKRKSDPSAQEGSSAENEEDADSRYRFYESASARKRTVTAEERERAINESKTFEPTNPFCRVVLRPSYLYRGCIMYLPSSFAENNLNEVSGFIKLLGPTGKEFPVRCLYRGGRAKLSQGWYEFTVENGLGEGDVCVFELLRSREVVLKVTLFRVREDETGLFDPSTLVSQNVSHAKLLNPHLQHRVGVTKLIKN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03862 435 MobiDBLite consensus disorder prediction 234 250 - -
Vivi4g03862 435 SMART B3_2 301 396 IPR003340 GO:0003677
Vivi4g03862 435 SMART B3_2 7 99 IPR003340 GO:0003677
Vivi4g03862 435 MobiDBLite consensus disorder prediction 225 263 - -
Vivi4g03862 435 PANTHER B3 DOMAIN-CONTAINING 3 384 - -
Vivi4g03862 435 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Vivi4g03862 435 SUPERFAMILY DNA-binding pseudobarrel domain 294 394 IPR015300 -
Vivi4g03862 435 ProSiteProfiles B3 DNA-binding domain profile. 301 396 IPR003340 GO:0003677
Vivi4g03862 435 Pfam B3 DNA binding domain 304 394 IPR003340 GO:0003677
Vivi4g03862 435 Pfam B3 DNA binding domain 13 97 IPR003340 GO:0003677
Vivi4g03862 435 Gene3D - 2 99 IPR015300 -
Vivi4g03862 435 Gene3D - 278 398 IPR015300 -
Vivi4g03862 435 CDD B3_DNA 299 394 IPR003340 GO:0003677
Vivi4g03862 435 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Vivi4g03862 435 CDD B3_DNA 5 97 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03862 Vivi-Chr4 157974894 157979228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03862 3 401 B3 DNA Binding Superfamily AT3G18990 48.267 6.44e-119 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g03862 B3 6.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03862 - - gmx:100789352 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03862 4 157974894 157979228 Vivi4g03862 4 157974894 157979228 ECH