Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03858 ATGGCTCACCATTATTCTAATAAGGTCTTAGGTTGTTTTCTTTTGTTTTCTTTAACCTTAACTTATGGCCATAGTCATTTTCTCATAGATCCAATAATTATTCCTGGATATGAAGTTTCACCAGGACATGATATTGGTGATGGTGATGCTCCAGCTCAATCACCCGAGCCGTTCGTCGGCGATTCTCCAGCTCAATCACCCGAGCCGTTTATCGATGATTCTCCCGCTCCTTCGCCTGAAAATGAAAATGTTGACAAAAGTTTTCCTAATGAGAGACTAAAACATTCTTATGTTGCATTTCAAGCATGGAAAAAGGCTATTTATTCTGACCCTTTTAACACAACTGGTAATTGGGTTGGTCATGATGTTTGTTCCTACAATGGTGTGTTTTGTTCTCCTGCTCTTGATGATCCTACACTGAATGTTGTTGCTGGTGTTGATATTAATCACGCCGATATCGCCGGTCACCTTCCGGAAGAGTTAGGACTATTGAATGATACTTCTCTTTTCCATATTAACTCAAACAGGTTCTGTGGTATAATTCCGGATAGCTTTGAGAATCTAACCATAATGTACGAGTTTGATATCAGTAACAACCGCTTCGTCGGCGATTTTCCTTTAGTGGTTTTGAAATGGAAAAATTTGACCTACTTGGATATTAGATTCAATGATTTTGAAGGAGTTTTACCTCATGAGCTATTTGAGAAAGAACTTGATGCAATATTTTTGAACAACAACCGTTTCACATCACATATACCAGAAACACTTGGAAAATCAACAGCCTCTGTTGTGACTTTTGCAAACAATAACTTTACAGGTTGTATTCCAAAATCAATTGGAAACATGCGGAACTTGAATGAGATTGTGTTCTTAGGAAATGATCTTGGTGGTTGTTTTCCTCAAGAGATTGGTTTGTTAGGGGAAGTAACAGTTTTGGATGCTAGCAAAAATGGGTTTGTTGGGACACTACCAAACTTAGCAGGGTTGAAGAATGTTGAGGTTATTGACATAGCACATAACAAGTTTAGTGGATATGTTTCCAACACTATTTGTCAACTACCTACTTTGAAGAACTTTACATTTTCTTATAATTACTTTAATGGAGAAGCACAAACTTGTGTTCCTTCAGATAGTTGTTCTGTTGAGTTGGATGATGCAAAAAATTGTTTACCTGGAAGGAAGAATCAAAAGACATCTAAACAATGTTTACCTGTTTTGACTAAACCTGTGGATTGTAGCAAGAACTGTGGTGGAGGAAAAGGAAAGAGTCATGATCCATCAGAGCCTAAACCAACTCCATCAAATCCATCAAAATCTCATCCTCCTAAGGTGGAGACACCAGAGGCTAAGCCACCACCAACTCCAAAGGCTCAAACACCACAAATTCCACCGACACTTCCACCGGTTGAGGATATTCCACCAACCGTTGCACCAGTGTCATCACCACCACCACCACCACCGGTTAAGCACATTCCACCTATGTTACCACCAGTTGAAGATATTCCACCAACCGTTGCACCAGTGTTTTCACCACCCCCACCGGTTGAGCGTATTCCACCTATGCTACCACCAGTTGAAGATATCCCACCAACCGTTGCACCAGTGTTTTCACCACCCCCACCGGTTGAGCGTATTCCACCTATGCTACCACCAGTTGAAGATATCCCACCAACCGTTGCACCAGTGTTTTCACCACCCCCACCGGTTGAGCGTATTCCACCTATGCTACCACCAGTTGAAGATATTCCACCAACCGTTGCACCAGTGTTTTCACCACCTCCACCGGTTGAGCGCATTCCACCTATGCTACCACCAGTTGAAGATATTCCACCAACCGTTGCACCAGTGTTTTCACCACCCCCACCGGTTGAGCGCATTCCACCTATGCTACCACCAGTTGAAGATATTCCACCAACCGTTGCACCAGTGTCATCACCACCACCGGTTGAGAAAATCCCGCCCATGCTACCACCAGTTGAAGATATTCCACCAATCGTTGCACCAGTGTCATCACCACCACCACCTGCTCAAGTCAACTCACCACCACCACCAGTTCACTCTCCTCCACCACCCTCACCAGCCCATTCCCCACCTCCACCAGTCAACTCTCCACCACCACCACCAGTGTACTCCCCTCCTCCACCCTCGCCAGTCCACTCTCCCCCTCCACCAGTTTATTCTCCACCACCACCAGTCCATTCTCCACCACCACCAGTTCATTCTCCTCCACCACCTCCGATTTACTCTCCCCCACCACCAATTCACTCTCCACCCCCACCAGTCCATTCACCACCACCTCCAGTTCATTCTCCACCCCCACCAGTCCATTCTCCACCACCTCCAGTTAACTCCCCACCCCCACCAGTTCATTCTCCTCCTCCACCGGTCTACTCACCACCACCACCACAGGTGCATTCTCCACCACCACCGGTCAACTCACCTCCACCACCAGTACACTCCCCTCCTCCTCCCCGGGTCAACTCACCACCACCACCAGTACACTCGCCTCCTCCACCGGTCAATTTACCATCACCACCAAAATGGGATGACATCACACTACCACCAAACATTGGAGCTGAATATAGGTCACCTCCTCCTCCAACAATTGCTGGATACTAA 2619 0.459 MAHHYSNKVLGCFLLFSLTLTYGHSHFLIDPIIIPGYEVSPGHDIGDGDAPAQSPEPFVGDSPAQSPEPFIDDSPAPSPENENVDKSFPNERLKHSYVAFQAWKKAIYSDPFNTTGNWVGHDVCSYNGVFCSPALDDPTLNVVAGVDINHADIAGHLPEELGLLNDTSLFHINSNRFCGIIPDSFENLTIMYEFDISNNRFVGDFPLVVLKWKNLTYLDIRFNDFEGVLPHELFEKELDAIFLNNNRFTSHIPETLGKSTASVVTFANNNFTGCIPKSIGNMRNLNEIVFLGNDLGGCFPQEIGLLGEVTVLDASKNGFVGTLPNLAGLKNVEVIDIAHNKFSGYVSNTICQLPTLKNFTFSYNYFNGEAQTCVPSDSCSVELDDAKNCLPGRKNQKTSKQCLPVLTKPVDCSKNCGGGKGKSHDPSEPKPTPSNPSKSHPPKVETPEAKPPPTPKAQTPQIPPTLPPVEDIPPTVAPVSSPPPPPPVKHIPPMLPPVEDIPPTVAPVFSPPPPVERIPPMLPPVEDIPPTVAPVFSPPPPVERIPPMLPPVEDIPPTVAPVFSPPPPVERIPPMLPPVEDIPPTVAPVFSPPPPVERIPPMLPPVEDIPPTVAPVFSPPPPVERIPPMLPPVEDIPPTVAPVSSPPPVEKIPPMLPPVEDIPPIVAPVSSPPPPAQVNSPPPPVHSPPPPSPAHSPPPPVNSPPPPPVYSPPPPSPVHSPPPPVYSPPPPVHSPPPPVHSPPPPPIYSPPPPIHSPPPPVHSPPPPVHSPPPPVHSPPPPVNSPPPPVHSPPPPVYSPPPPQVHSPPPPVNSPPPPVHSPPPPRVNSPPPPVHSPPPPVNLPSPPKWDDITLPPNIGAEYRSPPPPTIAGY 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03858 872 FunFam Pollen-specific leucine-rich repeat extensin-like protein 1 96 394 - -
Vivi4g03858 872 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 67 648 - -
Vivi4g03858 872 MobiDBLite consensus disorder prediction 637 872 - -
Vivi4g03858 872 PRINTS Proline rich extensin signature 553 570 - -
Vivi4g03858 872 PRINTS Proline rich extensin signature 523 539 - -
Vivi4g03858 872 PRINTS Proline rich extensin signature 441 453 - -
Vivi4g03858 872 PRINTS Proline rich extensin signature 460 476 - -
Vivi4g03858 872 PRINTS Proline rich extensin signature 485 497 - -
Vivi4g03858 872 PRINTS Proline rich extensin signature 502 523 - -
Vivi4g03858 872 MobiDBLite consensus disorder prediction 413 495 - -
Vivi4g03858 872 MobiDBLite consensus disorder prediction 429 495 - -
Vivi4g03858 872 MobiDBLite consensus disorder prediction 637 850 - -
Vivi4g03858 872 Gene3D Ribonuclease Inhibitor 96 394 IPR032675 -
Vivi4g03858 872 MobiDBLite consensus disorder prediction 43 87 - -
Vivi4g03858 872 SUPERFAMILY L domain-like 100 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03858 Vivi-Chr4 157946146 157949052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03858 83 415 Trihelix Transcription Factor Family AT3G19020 68.263 1.54e-172 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03858 - - vvo:131634815 1079.32