Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03849 ATGAATCCTTCTACTAGGAATACTGTTGGGCCAGGAGGAATGGGAATGGATATACCGATTATGCATGAGAGTGATAGGTATGAGCTTGTTCGTGATATTGGGTCTGGGAATTTTGGGGTGGCTAGGCTTATGAGAGATAAACTCACTAATCAACGTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTTCAAAGGGAAATTATAAATCATAGATCACTCAGGCATCCTAATATTGTCAGGTTCAAGGAGGTAATACTTACCCCTACACATTTAGCAATTGTGATGGAATATGCTTCTGGTGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGGTTCAGCGAGGACGAGGCACGGTTTTTCTTTCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGCAAGTATGTCATCGTGACTTGAAGTTGGAGAACACGTTGTTGGATGGTAGTCCGGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGTCATCAGTGCTACATTCACAACCAAAATCTACTGTTGGAACACCGGCATATATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGTGTTACCTTATATGTCATGTTGGTGGGTGCATATCCTTTCGAGGATCCGGAGGAGCCAAAAAATTTCCGGAAGACTATTCATAGGATTTTGAAAGTCCAATACTCAATTCCTGATTATGTTCAAATATCTCCCGAGTGCCGTCATCTGATCTCAAGGATCTTCGTTGCAGACCCTGCACAGAGAATAAGCATGTCTGAGATTCGAAGCCATGTGTGGTTTTTGAAGAACCTTCCGGCCGATCTTGTAGTCGGAAATACAATGAATGACCAGTTTCAAGAGCCTGAACAACCGATGCAGACCGTTGAAGAAATCATGCAGATAATTAGTGAAGCTACTATTCCTGCAGCTGGAACTCATCAGTCTATCAGCCAGTATCTCACTGGTAGTTTGGACATTGATGACGAAATGGACGAGGATGTAGAGACCGATCCGGACCTTGATATCGATAGCAGTGGCGAAATAGTTTATGCAATGTAA 1107 0.4237 MNPSTRNTVGPGGMGMDIPIMHESDRYELVRDIGSGNFGVARLMRDKLTNQRVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVQISPECRHLISRIFVADPAQRISMSEIRSHVWFLKNLPADLVVGNTMNDQFQEPEQPMQTVEEIMQIISEATIPAAGTHQSISQYLTGSLDIDDEMDEDVETDPDLDIDSSGEIVYAM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03849 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vivi4g03849 368 FunFam Serine/threonine-protein kinase SRK2E 103 291 - -
Vivi4g03849 368 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Vivi4g03849 368 PANTHER SERINE/THREONINE KINASE 26 312 - -
Vivi4g03849 368 ProSiteProfiles Protein kinase domain profile. 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03849 368 Gene3D Phosphorylase Kinase; domain 1 10 102 - -
Vivi4g03849 368 Gene3D Transferase(Phosphotransferase) domain 1 103 291 - -
Vivi4g03849 368 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Vivi4g03849 368 FunFam Serine/threonine-protein kinase SRK2E 16 102 - -
Vivi4g03849 368 SMART serkin_6 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03849 368 Pfam Protein kinase domain 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03849 368 CDD STKc_SnRK2 26 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03849 Vivi-Chr4 157841833 157844649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03849 26 313 CBL-interacting serine-threonine protein kinases AT5G25110 42.000 4.39e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi4g03849 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03849 K14498 - gmx:100804702 666.766