Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03817 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTATTTGGTGAAGAAAAAGTTGCACAATACTGCCAAGTCTTTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCCGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGACTCAGCAAATTAAAGCAAAAGAGCAGCAATTGCAAATGCAGCAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAGAAGGGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACTACAGAAGGAGTGCTAGGGCAATCTACTGCCACTGCATTGGCTGCAAAAATGTATGAGGATCGAATGAAGAACTCTAACCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAATGTGACAGCAGCTTTGCAGCAAATGCAGGTTCGAACTCAGCAAATCCCTGATATCAAAAGCGAGGTCAACATGGGAAACATGCAGAGATCCTTACCTATGGACCCTTCTTCAATTTATGGGCAGGGTGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAAGGAGTTGGTGGTCTCACATTAAAAGGATGGCCATTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTTCTTCAGAGTGCAAATCAGTTCCAGCTTTTGCCACAACAACAACAACAGCAGCTCCTTGCACAGGCACATGCACAAGGAAATATTGGCAATTCACAAGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAGGTTTGAATGTGAAAGACAGTCAGCCAATTGCAAATGATGGGTCAATAGGTTCTCCAATGCAACCTACTTCATCTAAGATCAACATGCCACAGATGCAACAGTCCATCTCCCAGCAACAGCAGGATCCTTTACACCCGCAGCAACTGGGTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCGGGAGCTGCCAATAGTACTGGCACAGGAAATACACTTGGCCCTTCTAACTCTCAACCATCAACTCCATCCACTCATACTCCTGGTGATGGAGTTGCTATGGCAGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATGATGTTTGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGACCTGGAACCTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAAGGACTTATTCGGGACATTGAAACGGAATCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAATGAAGTTGGTTCTGTACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTATGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCCTTTGATACAACTGTGCGACTTTGGGATGCTGCAGATCCAAACTTTTCCTTGCAGGCATATAGTGGTCATTCTTCTCATGTTGCATCCCTTGATTTCCACCCTAAGAAAAACGACGTTTTCTGTTCCTGTGATGATAACAGTGAGATTCGCCTCTGGAATATTAATCAATATTCTTGTACTCGCGCCTTTAAGGGGGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCTGCAGCATCTGGCAATGTTGTTTCTCTCTTTGATGTTGAGACTGACAGGAAAATGCACTCATTACAGGGACACTCTGCGGATGTACATTGTATATGCTGGGACACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTCTGGTCACTTGCCTCAGGGGATTGCATTCATGAACTTAATTCCAGTGGAAACATCTTTCACTCCTGTGTTTTTCATCCAAGCTACTCCAACCTCTTGGTTATTGGTGGATACCAGTCATTGGAGCTATGGTTAATGGCCGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAGTCTGTAAAGTTATGGAAATAA 2349 0.4351 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLETQQIKAKEQQLQMQQLQLMRHAQLQRRDPNHPPIGSPLNAITTEGVLGQSTATALAAKMYEDRMKNSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGNVTAALQQMQVRTQQIPDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPIANDGSIGSPMQPTSSKINMPQMQQSISQQQQDPLHPQQLGQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMFGTEGAGGLASSTNQLDDLEPFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKGFSFNEVGSVRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAADPNFSLQAYSGHSSHVASLDFHPKKNDVFCSCDDNSEIRLWNINQYSCTRAFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRKMHSLQGHSADVHCICWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNIFHSCVFHPSYSNLLVIGGYQSLELWLMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKLWK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03817 782 CDD WD40 497 782 - -
Vivi4g03817 782 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 782 IPR001680 GO:0005515
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 782 - -
Vivi4g03817 782 MobiDBLite consensus disorder prediction 320 413 - -
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 708 IPR001680 GO:0005515
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Vivi4g03817 782 MobiDBLite consensus disorder prediction 325 406 - -
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 536 - -
Vivi4g03817 782 Coils Coil 79 99 - -
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Vivi4g03817 782 Pfam LisH 10 36 IPR006594 GO:0005515
Vivi4g03817 782 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Vivi4g03817 782 SUPERFAMILY WD40 repeat-like 495 782 IPR036322 GO:0005515
Vivi4g03817 782 Pfam WD domain, G-beta repeat 506 533 IPR001680 GO:0005515
Vivi4g03817 782 Pfam WD domain, G-beta repeat 538 575 IPR001680 GO:0005515
Vivi4g03817 782 Pfam WD domain, G-beta repeat 749 782 IPR001680 GO:0005515
Vivi4g03817 782 Pfam WD domain, G-beta repeat 583 619 IPR001680 GO:0005515
Vivi4g03817 782 Pfam WD domain, G-beta repeat 664 699 IPR001680 GO:0005515
Vivi4g03817 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 628 IPR001680 GO:0005515
Vivi4g03817 782 SMART WD40_4 661 699 IPR001680 GO:0005515
Vivi4g03817 782 SMART WD40_4 536 575 IPR001680 GO:0005515
Vivi4g03817 782 SMART WD40_4 622 658 IPR001680 GO:0005515
Vivi4g03817 782 SMART WD40_4 579 619 IPR001680 GO:0005515
Vivi4g03817 782 SMART WD40_4 743 782 IPR001680 GO:0005515
Vivi4g03817 782 SMART WD40_4 494 533 IPR001680 GO:0005515
Vivi4g03817 782 SMART WD40_4 702 741 IPR001680 GO:0005515
Vivi4g03817 782 Gene3D - 634 782 IPR015943 GO:0005515
Vivi4g03817 782 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 782 IPR044716 GO:0003714
Vivi4g03817 782 SMART Lish 8 40 IPR006594 GO:0005515
Vivi4g03817 782 Gene3D - 476 633 IPR015943 GO:0005515
Vivi4g03817 782 PRINTS G protein beta WD-40 repeat signature 769 782 IPR020472 -
Vivi4g03817 782 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Vivi4g03817 782 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03817 Vivi-Chr4 157271648 157291266 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03817 519 700 U-box Gene Family AT2G33340 27.513 2.51e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi4g03817 WD40 0.019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03817 - - var:108326218 1348.18