Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03814 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTATTTGGTGAAGAAAAAGTTGCACAATACTGCCAAGTCTTTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCCGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGACTCAGCAAATTAAAGCAAAAGAGCAGCAATTGCAAATGCAGCAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAGAAGGGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACTACAGAAGGAGTGCTAGGGCAATCTACTGCCACTGCATTGGCTGCAAAAATGTATGAGGATCGAATGAAGAACTCTAACCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAATGTGACAGCAGCTTTGCAGCAAATGCAGCAGGATATCAAAAGCGAGGTCAACATGGGAAACATGCAGAGATCCTTACCTATGGACCCTTCTTCAATTTATGGGCAGGGTGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAAGGAGTTGGTGGTCTCACATTAAAAGGATGGCCATTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTTCTTCAGAGTGCAAATCAGTTCCAGCTTTTGCCACAACAACAACAACAGCAGCTCCTTGCACAGGCACATGCACAAGGAAATATTGGCAATTCACAAGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAGGTTTGAATGTGAAAGACAGTCAGCCAATTGCAAATGATGGGTCAATAGGTTCTCCAATGCAACCTACTTCATCTAAGCAGATCAACATGCCACAGATGCAACAGTCCATCTCCCAGCAACAGCAGGATCCTTTACACCCGCAGCAACTGGGTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCGGGAGCTGCCAATAGTACTGGCACAGGAAATACACTTGGCCCTTCTAACTCTCAACCATCAACTCCATCCACTCATACTCCTGGTGATGGAGTTGCTATGGCAGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATGATGTTTGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGACCTGGAACCTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAAGGACTTATTCGGGACATTGAAACGGAATCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAATGAAGTTGGTTCTGTACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTATGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCCTTTGATACAACTGTGCGACTTTGGGATGCTGCAGATCCAAACTTTTCCTTGCAGGCATATAGTGGTCATTCTTCTCATGTTGCATCCCTTGATTTCCACCCTAAGAAAAACGACGTTTTCTGTTCCTGTGATGATAACAGTGAGATTCGCCTCTGGAATATTAATCAATATTCTTGTACTCGCGCCTTTAAGGGGGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCTGCAGCATCTGGCAATGTTGTTTCTCTCTTTGATGTTGAGACTGACAGGAAAATGCACTCATTACAGGGACACTCTGCGGATGTACATTGTATATGCTGGGACACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTCTGGTCACTTGCCTCAGGGGATTGCATTCATGAACTTAATTCCAGTGGAAACATCTTTCACTCCTGTGTTTTTCATCCAAGCTACTCCAACCTCTTGGTTATTGGTGGATACCAGTCATTGGAGCTATGGTTAATGGCCGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAGTCTGTAAAGTTATGGAAATAA 2334 0.4353 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLETQQIKAKEQQLQMQQLQLMRHAQLQRRDPNHPPIGSPLNAITTEGVLGQSTATALAAKMYEDRMKNSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGNVTAALQQMQQDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPIANDGSIGSPMQPTSSKQINMPQMQQSISQQQQDPLHPQQLGQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMFGTEGAGGLASSTNQLDDLEPFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKGFSFNEVGSVRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAADPNFSLQAYSGHSSHVASLDFHPKKNDVFCSCDDNSEIRLWNINQYSCTRAFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRKMHSLQGHSADVHCICWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNIFHSCVFHPSYSNLLVIGGYQSLELWLMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKLWK 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 538 570 - -
Vivi4g03814 777 Pfam WD domain, G-beta repeat 578 614 IPR001680 GO:0005515
Vivi4g03814 777 Pfam WD domain, G-beta repeat 659 694 IPR001680 GO:0005515
Vivi4g03814 777 Pfam WD domain, G-beta repeat 501 528 IPR001680 GO:0005515
Vivi4g03814 777 Pfam WD domain, G-beta repeat 533 570 IPR001680 GO:0005515
Vivi4g03814 777 Pfam WD domain, G-beta repeat 744 777 IPR001680 GO:0005515
Vivi4g03814 777 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vivi4g03814 777 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 777 IPR044716 GO:0003714
Vivi4g03814 777 SMART WD40_4 489 528 IPR001680 GO:0005515
Vivi4g03814 777 SMART WD40_4 697 736 IPR001680 GO:0005515
Vivi4g03814 777 SMART WD40_4 656 694 IPR001680 GO:0005515
Vivi4g03814 777 SMART WD40_4 574 614 IPR001680 GO:0005515
Vivi4g03814 777 SMART WD40_4 531 570 IPR001680 GO:0005515
Vivi4g03814 777 SMART WD40_4 617 653 IPR001680 GO:0005515
Vivi4g03814 777 SMART WD40_4 738 777 IPR001680 GO:0005515
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 616 - -
Vivi4g03814 777 MobiDBLite consensus disorder prediction 314 408 - -
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 745 777 IPR001680 GO:0005515
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 703 IPR001680 GO:0005515
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 531 - -
Vivi4g03814 777 Gene3D - 629 777 IPR015943 GO:0005515
Vivi4g03814 777 MobiDBLite consensus disorder prediction 319 401 - -
Vivi4g03814 777 ProSitePatterns Trp-Asp (WD) repeats signature. 515 529 IPR019775 -
Vivi4g03814 777 Coils Coil 79 99 - -
Vivi4g03814 777 Pfam LisH 10 36 IPR006594 GO:0005515
Vivi4g03814 777 Gene3D - 471 628 IPR015943 GO:0005515
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 745 777 - -
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 623 IPR001680 GO:0005515
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 570 IPR001680 GO:0005515
Vivi4g03814 777 PRINTS G protein beta WD-40 repeat signature 764 777 IPR020472 -
Vivi4g03814 777 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Vivi4g03814 777 PRINTS G protein beta WD-40 repeat signature 557 571 IPR020472 -
Vivi4g03814 777 SUPERFAMILY WD40 repeat-like 490 777 IPR036322 GO:0005515
Vivi4g03814 777 CDD WD40 492 777 - -
Vivi4g03814 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 537 IPR001680 GO:0005515
Vivi4g03814 777 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03814 Vivi-Chr4 157271648 157291267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03814 514 695 U-box Gene Family AT2G33340 27.513 2.47e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi4g03814 WD40 0.019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03814 - - var:108326218 1328.54