Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03813 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTATTTGGTGAAGAAAAAGTTGCACAATACTGCCAAGTCTTTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCCGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGACTCAGCAAATTAAAGCAAAAGAGCAGCAATTGCAAATGCAGCAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAGAAGGGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACTACAGAAGGAGTGCTAGGGCAATCTACTGCCACTGCATTGGCTGCAAAAATGTATGAGGATCGAATGAAGAACTCTAACCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAATGTGACAGCAGCTTTGCAGCAAATGCAGGATATCAAAAGCGAGGTCAACATGGGAAACATGCAGAGATCCTTACCTATGGACCCTTCTTCAATTTATGGGCAGGGTGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAAGGAGTTGGTGGTCTCACATTAAAAGGATGGCCATTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTTCTTCAGAGTGCAAATCAGTTCCAGCTTTTGCCACAACAACAACAACAGCAGCTCCTTGCACAGGCACATGCACAAGGAAATATTGGCAATTCACAAGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAGGTTTGAATGTGAAAGACAGTCAGCCAATTGCAAATGATGGGTCAATAGGTTCTCCAATGCAACCTACTTCATCTAAGCAGATCAACATGCCACAGATGCAACAGTCCATCTCCCAGCAACAGCAGGATCCTTTACACCCGCAGCAACTGGGTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCGGGAGCTGCCAATAGTACTGGCACAGGAAATACACTTGGCCCTTCTAACTCTCAACCATCAACTCCATCCACTCATACTCCTGGTGATGGAGTTGCTATGGCAGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATGATGTTTGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGACCTGGAACCTTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAAGGACTTATTCGGGACATTGAAACGGAATCCTTCTGAGCATGCTACAGATGCTTCAAAAGGCTTTTCCTTCAATGAAGTTGGTTCTGTACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTATGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCCTTTGATACAACTGTGCGACTTTGGGATGCTGCAGATCCAAACTTTTCCTTGCAGGCATATAGTGGTCATTCTTCTCATGTTGCATCCCTTGATTTCCACCCTAAGAAAAACGACGTTTTCTGTTCCTGTGATGATAACAGTGAGATTCGCCTCTGGAATATTAATCAATATTCTTGTACTCGCGCCTTTAAGGGGGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCTGCAGCATCTGGCAATGTTGTTTCTCTCTTTGATGTTGAGACTGACAGGAAAATGCACTCATTACAGGGACACTCTGCGGATGTACATTGTATATGCTGGGACACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTCTGGTCACTTGCCTCAGGGGATTGCATTCATGAACTTAATTCCAGTGGAAACATCTTTCACTCCTGTGTTTTTCATCCAAGCTACTCCAACCTCTTGGTTATTGGTGGATACCAGTCATTGGAGCTATGGTTAATGGCCGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAGTCTGTAAAGTTATGGAAATAA 2331 0.435 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLETQQIKAKEQQLQMQQLQLMRHAQLQRRDPNHPPIGSPLNAITTEGVLGQSTATALAAKMYEDRMKNSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGNVTAALQQMQDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPIANDGSIGSPMQPTSSKQINMPQMQQSISQQQQDPLHPQQLGQNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLMMFGTEGAGGLASSTNQLDDLEPFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKGFSFNEVGSVRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAADPNFSLQAYSGHSSHVASLDFHPKKNDVFCSCDDNSEIRLWNINQYSCTRAFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRKMHSLQGHSADVHCICWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNIFHSCVFHPSYSNLLVIGGYQSLELWLMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKLWK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03813 776 ProSitePatterns Trp-Asp (WD) repeats signature. 514 528 IPR019775 -
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 744 776 IPR001680 GO:0005515
Vivi4g03813 776 MobiDBLite consensus disorder prediction 313 407 - -
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 569 IPR001680 GO:0005515
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 744 776 - -
Vivi4g03813 776 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vivi4g03813 776 MobiDBLite consensus disorder prediction 318 400 - -
Vivi4g03813 776 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 776 IPR044716 GO:0003714
Vivi4g03813 776 Gene3D - 470 627 IPR015943 GO:0005515
Vivi4g03813 776 Gene3D - 628 776 IPR015943 GO:0005515
Vivi4g03813 776 Pfam WD domain, G-beta repeat 532 569 IPR001680 GO:0005515
Vivi4g03813 776 Pfam WD domain, G-beta repeat 743 776 IPR001680 GO:0005515
Vivi4g03813 776 Pfam WD domain, G-beta repeat 577 613 IPR001680 GO:0005515
Vivi4g03813 776 Pfam WD domain, G-beta repeat 658 693 IPR001680 GO:0005515
Vivi4g03813 776 Pfam WD domain, G-beta repeat 500 527 IPR001680 GO:0005515
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 530 - -
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 615 - -
Vivi4g03813 776 Coils Coil 79 99 - -
Vivi4g03813 776 Pfam LisH 10 36 IPR006594 GO:0005515
Vivi4g03813 776 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Vivi4g03813 776 PRINTS G protein beta WD-40 repeat signature 514 528 IPR020472 -
Vivi4g03813 776 PRINTS G protein beta WD-40 repeat signature 763 776 IPR020472 -
Vivi4g03813 776 CDD WD40 491 776 - -
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 662 702 IPR001680 GO:0005515
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 569 - -
Vivi4g03813 776 SMART WD40_4 488 527 IPR001680 GO:0005515
Vivi4g03813 776 SMART WD40_4 696 735 IPR001680 GO:0005515
Vivi4g03813 776 SMART WD40_4 655 693 IPR001680 GO:0005515
Vivi4g03813 776 SMART WD40_4 573 613 IPR001680 GO:0005515
Vivi4g03813 776 SMART WD40_4 530 569 IPR001680 GO:0005515
Vivi4g03813 776 SMART WD40_4 616 652 IPR001680 GO:0005515
Vivi4g03813 776 SMART WD40_4 737 776 IPR001680 GO:0005515
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 536 IPR001680 GO:0005515
Vivi4g03813 776 SUPERFAMILY WD40 repeat-like 489 776 IPR036322 GO:0005515
Vivi4g03813 776 SMART Lish 8 40 IPR006594 GO:0005515
Vivi4g03813 776 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 622 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03813 Vivi-Chr4 157271648 157291267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03813 513 694 U-box Gene Family AT2G33340 27.513 2.53e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vivi4g03813 WD40 0.019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03813 - - var:108326218 1326.23