Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03803 ATGAAGAATGAAGAATGGTCACCATACATTACTTCTTCTGACAAAACATTGAAAGAAAAGACTTTGAAACGGCAAAAGGTGAACAAAGCCTTATCAATTTTTAGGGGCTTGTCTCACAAGCTGTATTGTGAGTACAAGTTAAGTGAAGTTAAGAACTTCAACTTAAAAACAAAAGCTTTGACAGAAGCTGCAATGATTATGAAAGAGAAACATCAATGGGAAAACACTTGGAAGAGATTAGGGCATGTAGATGGAATTGAAGTTGGTGATCACTTTCAGTACAGGGCTGAACTTGTTGTCATTGGTCTTCATCAGCAATTCCGCAATGGTATTGATTTTTTGGGTAAAGGTGAGTTTTCTTTGGCAACTAGTATTGTTGTAACTCATAGGTATGATAATGTTAGGAAGTCTGGTGGTTGTTTGGTTTATGAAGGTCAAGGTAGTAATCCTAATGTGCGGACAAGAGCCGCGGCTCCTCGCGATCAGAAATTGGAAGGGGGAAATCTAGCTTTGAGGAATAGTATGATTGCTAGGAAGCCTGTTAGGGTTATATTGAAGGTTTGTGGGAAATTTAATGGTATGGAAGAATGGAAGAACACCGTTTCTGATTATTCATATGTATATGATGGGCTGTATTCGATTGACAGGATGTCTCAAGATAGGGGACAATTTGGAAAACTTGTGTTCAAGTTTGTACTGAACAAAATTTCGGATAAATCCGCAAGTGTTTTCCCTCGGGATGTTGTTAAGGGAAGAGAAACTTTCTTGAAGAGACAGAATTCTAAATGTCATGCTCTCGACAAGGATGTGATTCGAATAAATGATATTTCAGAGGGGAAAGAAAAACATCCAATTCGAGTGGTGACACCAATAAGTTGTGTGGAGAAACCTAAACCCTTTGGCTACCTAGTCAAAATGAGTTATCCAAAGATGAATCATTCAACACTAGGTGGTGGATGTGATTGTGAAAATGCATGTGTTGATTCTCTTAAATGTGTTTGCATGGCTAAGAATAATGGTGGGACAATAGCTTATGGTGCTAACAAAAGACTGGTTTCTCCTACGAAACCATCCTTTATATACGAGTGTGGCCCTTCTTGCGCGTGTTCATCCTCTTGCATCAACCGAGTGAGTCAATGTGGTATTCAGTTCCAACTAGAAATCTTCAAAACAAATTGGAAGGGGTGGGGTGTTAGAACGCGATCTTTCATTCCATCCGGAAGCTTTGTGTGTGAGCTCATTGGAGAGCTTGTTCATGAAAACAATGAAAAAGCTGGATCAAATCCACATGTTAATGACTACATGTTTAATATAGGTGGTGGCAGGTTCATTGATGCAAGTCGACATGGAAACATCGGAAGGTTTATAAATCATAGTTGTTGTCCTAACCTATGCATGAAAGATGTTATGTATGATCACAATGACAAGAGTCAACCACACAAAATGCTGTTTGCTTTAAAGGACATAGCTGCAGGTAGAGAGGTTAGTTATGATTACAATTGCTGCAAGGGGAATATCAAGGGATTGAGTAATATTTGCTACTGTGGTTCATCACAATGCAATGGATGTATCTTCAATTGA 1581 0.3877 MKNEEWSPYITSSDKTLKEKTLKRQKVNKALSIFRGLSHKLYCEYKLSEVKNFNLKTKALTEAAMIMKEKHQWENTWKRLGHVDGIEVGDHFQYRAELVVIGLHQQFRNGIDFLGKGEFSLATSIVVTHRYDNVRKSGGCLVYEGQGSNPNVRTRAAAPRDQKLEGGNLALRNSMIARKPVRVILKVCGKFNGMEEWKNTVSDYSYVYDGLYSIDRMSQDRGQFGKLVFKFVLNKISDKSASVFPRDVVKGRETFLKRQNSKCHALDKDVIRINDISEGKEKHPIRVVTPISCVEKPKPFGYLVKMSYPKMNHSTLGGGCDCENACVDSLKCVCMAKNNGGTIAYGANKRLVSPTKPSFIYECGPSCACSSSCINRVSQCGIQFQLEIFKTNWKGWGVRTRSFIPSGSFVCELIGELVHENNEKAGSNPHVNDYMFNIGGGRFIDASRHGNIGRFINHSCCPNLCMKDVMYDHNDKSQPHKMLFALKDIAAGREVSYDYNCCKGNIKGLSNICYCGSSQCNGCIFN 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03803 526 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 17 519 - -
Vivi4g03803 526 SMART preset_2 273 368 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03803 526 SUPERFAMILY SET domain 266 515 IPR046341 -
Vivi4g03803 526 ProSiteProfiles SET domain profile. 384 500 IPR001214 GO:0005515
Vivi4g03803 526 Gene3D SET domain 265 525 IPR046341 -
Vivi4g03803 526 Gene3D - 62 262 IPR036987 -
Vivi4g03803 526 ProSiteProfiles YDG domain profile. 81 235 IPR003105 -
Vivi4g03803 526 Pfam SET domain 395 500 IPR001214 GO:0005515
Vivi4g03803 526 SMART G9a_1 76 239 IPR003105 -
Vivi4g03803 526 SUPERFAMILY PUA domain-like 63 241 IPR015947 -
Vivi4g03803 526 Pfam Pre-SET motif 276 376 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03803 526 Pfam SAD/SRA domain 80 238 IPR003105 -
Vivi4g03803 526 ProSiteProfiles Pre-SET domain profile. 318 381 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi4g03803 526 SMART set_7 384 506 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03803 Vivi-Chr4 157049815 157052079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03803 46 522 Su(var)3-9 homologs AT1G73100 32.500 9.87e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi4g03803 SAD_SRA 1.4e-37 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03803 - - gmx:100807574 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03803 4 157049815 157052079 Vivi4g03803 4 157049815 157052079 ECH