Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03783 ATGTACGGCGGTAGTCACCGTGAATCCGAATCCGACAGCACCAGGATGCACAACGACGAAGACGAAGAAGACGAAGAAGGTTCCTTCAAGAGCTGGGCAAAGCAAACACAAGAAAGTTATCAGTTACAGCTCGCACTTGCGCTTCGCATTTCATCTCACTCATCTTCTCCCTCTCAATCCAACTGCTTGTTGGACTCCGAAACCACCTCTTCCCCTTCCGATTCCCCCCAATCACTCTCACACCGTTTTTGGGTTAATGGTTGTTTGCAATACTCTGATAAAATTCTAGATGGTTTTTACCTAATTCATGGGATGGATGCATATACATGGACTATAAGCACCGATATGCAGAATGTTGGTACGATTCCGTCATTTGAATCACTCATGTCGGTTAAGCCATCTGATAACTCGTCAATTGTAGTGGTTGCTATAGACAAATCTAGAGACCCTGCCTTGAGAGAATTGCAAAGTGGTGTATTAAGTCTCTCGAGTAACTGGATTACGATCAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTATAATAGGATGGGAGGAGGATCTTCCGACGAAGAAAATTTAGGTACACGCTGGAAGGAATGCTCTGAAATTCTTAAAAGCTGTCTACAGTCTATCATTCTTCCTGTTGGAAGCTTACCTGTTGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAAGTGTTAGCGGATTTAATCAACCTACCGTGTCGAATTGCTAAGGGTTGCAAGTATTGTAGAAAGGACACGGGTGCTTCTTGTATAGTGCAATTTGGTTCTGACAGGGAGTTTATGATTGATTTAGTAGGAAGGCCCGGGGAAACATACCAACCTGATTCTTCAGTGAACTCTGCATCTTCCATGTTGATCCCTTCACCATTATGTCATCCAAGGTTCAAACCAGTTGAAACAGCTGATTATACAAAGGCAATGGCTCAATTGTATTTCTTGGACAGTCAGGCACTACATCTTGCATTTGATACCACATCAGGTGGTACTTTTGATTGCAGTGGCAATATGGATCTACAGCAAACTGAAATGTTTGGTGCAAACTATGCTGGGGGCAACCATCATATTGTTGCTTTGAGTCCTGGAGCTCCCGGCACAGAGGAACATTTGTCTTTCAATGATTCAAATCAGTCTGGAATGAATTATTCAAGTCATGAAGTTGACCTTGAGGAGGAGGATCTGGACATTCCGTGGAGTGAACTTATTTTGAAAGAGAACATTGGGACAGGGTCGTTTGGAACTGTCCTTCGTGCGGACTGGCGTGGCTCTGACGTTGCTGTGAAGATACTTAAGGTACAAGGTTTTGATTCTGAACGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGCTTGCGTCATCCAAACATTGTACTTCTAATGGGTGCTGTAATCCAACCCCCGAAGTTATCAATTGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAACTTCTGCAGATGCCAACCGTTGTATCCTCAATTAGTGAGAAGCGTCGTTTAAGTATGGCATATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAAACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGCCTTTCACGTACAAAAGCAAATACATATCTTTCATCTAAAACAGCTGCTGGAACTCCTGAATGGATGGCACCAGAAGTCATCCGAGGTGAACAATCAGATGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTGGTGACCCTTCAACAACCATGGAGGCAGTTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAGAAATTCCAAGGCATGTGAATCCTCAAGTGGCTGCCTTGATTGAGCTCTGTTGGTCTGCGGATCCAAGGAGGCGGCCTTCTTTCTCCTACATTATGAAATATTTGCTGCAAATAATTGCCGACGCGAAAGTGTGA 2019 0.4284 MYGGSHRESESDSTRMHNDEDEEDEEGSFKSWAKQTQESYQLQLALALRISSHSSSPSQSNCLLDSETTSSPSDSPQSLSHRFWVNGCLQYSDKILDGFYLIHGMDAYTWTISTDMQNVGTIPSFESLMSVKPSDNSSIVVVAIDKSRDPALRELQSGVLSLSSNWITIKDATDQLANLVYNRMGGGSSDEENLGTRWKECSEILKSCLQSIILPVGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDTGASCIVQFGSDREFMIDLVGRPGETYQPDSSVNSASSMLIPSPLCHPRFKPVETADYTKAMAQLYFLDSQALHLAFDTTSGGTFDCSGNMDLQQTEMFGANYAGGNHHIVALSPGAPGTEEHLSFNDSNQSGMNYSSHEVDLEEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPTVVSSISEKRRLSMAYDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTYLSSKTAAGTPEWMAPEVIRGEQSDEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMGKRLEIPRHVNPQVAALIELCWSADPRRRPSFSYIMKYLLQIIADAKV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03783 672 PRINTS Tyrosine kinase catalytic domain signature 634 656 IPR001245 GO:0004672|GO:0006468
Vivi4g03783 672 PRINTS Tyrosine kinase catalytic domain signature 524 542 IPR001245 GO:0004672|GO:0006468
Vivi4g03783 672 PRINTS Tyrosine kinase catalytic domain signature 483 496 IPR001245 GO:0004672|GO:0006468
Vivi4g03783 672 PRINTS Tyrosine kinase catalytic domain signature 590 612 IPR001245 GO:0004672|GO:0006468
Vivi4g03783 672 PRINTS Tyrosine kinase catalytic domain signature 571 581 IPR001245 GO:0004672|GO:0006468
Vivi4g03783 672 FunFam Serine/threonine-protein kinase isoform 1 399 487 - -
Vivi4g03783 672 Pfam Ethylene-responsive protein kinase Le-CTR1 77 279 - -
Vivi4g03783 672 SUPERFAMILY Protein kinase-like (PK-like) 389 663 IPR011009 -
Vivi4g03783 672 Pfam Protein tyrosine and serine/threonine kinase 410 663 IPR001245 GO:0004672|GO:0006468
Vivi4g03783 672 MobiDBLite consensus disorder prediction 1 34 - -
Vivi4g03783 672 SMART serkin_6 409 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03783 672 CDD STKc_MAP3K-like 415 663 - -
Vivi4g03783 672 Gene3D Phosphorylase Kinase; domain 1 402 487 - -
Vivi4g03783 672 FunFam Serine/threonine-protein kinase CTR1 488 672 - -
Vivi4g03783 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vivi4g03783 672 ProSitePatterns Protein kinases ATP-binding region signature. 415 436 IPR017441 GO:0005524
Vivi4g03783 672 ProSiteProfiles Protein kinase domain profile. 409 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03783 672 Gene3D Transferase(Phosphotransferase) domain 1 488 671 - -
Vivi4g03783 672 MobiDBLite consensus disorder prediction 58 77 - -
Vivi4g03783 672 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 71 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03783 Vivi-Chr4 156719078 156731665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03783 32 670 MAP Kinase Kinase Kinase AT5G03730 55.522 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi4g03783 PK_Tyr_Ser-Thr 1.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03783 K14510 - gmx:100807496 1098.19