Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03782 ATGTACGGCGGTAGTCACCGTGAATCCGAATCCGACAGCACCAGGATGCACAACGACGAAGACGAAGAAGACGAAGAAGGTTCCTTCAAGAGCTGGGCAAAGCAAACACAAGAAAGTTATCAGTTACAGCTCGCACTTGCGCTTCGCATTTCATCTCACTCATCTTCTCCCTCTCAATCCAACTGCTTGTTGGACTCCGAAACCACCTCTTCCCCTTCCGATTCCCCCCAATCACTCTCACACCGTTTTTGGGTTAATGGTTGTTTGCAATACTCTGATAAAATTCTAGATGGTTTTTACCTAATTCATGGGATGGATGCATATACATGGACTATAAGCACCGATATGCAGAATGTTGGTACGATTCCGTCATTTGAATCACTCATGTCGGTTAAGCCATCTGATAACTCGTCAATTGTAGTGGTTGCTATAGACAAATCTAGAGACCCTGCCTTGAGAGAATTGCAAAGTGGTGTATTAAGTCTCTCGAGTAACTGGATTACGATCAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTATAATAGGATGGGAGGAGGATCTTCCGACGAAGAAAATTTAGGTACACGCTGGAAGGAATGCTCTGAAATTCTTAAAAGCTGTCTACAGTCTATCATTCTTCCTGTTGGAAGCTTACCTGTTGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAAGTGTTAGCGGATTTAATCAACCTACCGTGTCGAATTGCTAAGGGTTGCAAGTATTGTAGAAAGGACACGGGTGCTTCTTGTATAGTGCAATTTGGTTCTGACAGGGAGTTTATGATTGATTTAGTAGGAAGGCCCGGGGAAACATACCAACCTGATTCTTCAGTGAACTCTGCATCTTCCATGTTGATCCCTTCACCATTATGTCATCCAAGGTTCAAACCAGTTGAAACAGCTGATTATACAAAGGCAATGGCTCAATTGTATTTCTTGGACAGTCAGGCACTACATCTTGCATTTGATACCACATCAGGTGGTACTTTTGATTGCAGTGGCAATATGGATCTACAGCAAACTGAAATGTTTGGTGCAAACTATGCTGGGGGCAACCATCATATTGTTGCTTTGAGTCCTGGAGCTCCCGGCACAGAGGAACATTTGTCTTTCAATGATTCAAATCAGTCTGGAATGAATTATTCAAGTCATGAAGTTGACCTTGAGGAGGAGGATCTGGACATTCCGTGGAGTGAACTTATTTTGAAAGAGAACATTGGGACAGGGTCGTTTGGAACTGTCCTTCGTGCGGACTGGCGTGGCTCTGACGTTGCTGTGAAGATACTTAAGGTACAAGGTTTTGATTCTGAACGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGCTTGCGTCATCCAAACATTGTACTTCTAATGGGTGCTGTAATCCAACCCCCGAAGTTATCAATTGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAACTTCTGCAGATGCCAACCGTTGTATCCTCAATTAGTGAGAAGCGTCGTTTAAGTATGGCATATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAAACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGCCTTTCACGTACAAAAGCAAATACATATCTTTCATCTAAAACAGCTGCTGGAACTCCTGAATGGATGGCACCAGAAGTCATCCGAGGTGAACAATCAGATGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTGGTGACCCTTCAACAACCATGGAGGCAGTTAAATCCTTCACAGTGTAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAG 1890 0.4259 MYGGSHRESESDSTRMHNDEDEEDEEGSFKSWAKQTQESYQLQLALALRISSHSSSPSQSNCLLDSETTSSPSDSPQSLSHRFWVNGCLQYSDKILDGFYLIHGMDAYTWTISTDMQNVGTIPSFESLMSVKPSDNSSIVVVAIDKSRDPALRELQSGVLSLSSNWITIKDATDQLANLVYNRMGGGSSDEENLGTRWKECSEILKSCLQSIILPVGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDTGASCIVQFGSDREFMIDLVGRPGETYQPDSSVNSASSMLIPSPLCHPRFKPVETADYTKAMAQLYFLDSQALHLAFDTTSGGTFDCSGNMDLQQTEMFGANYAGGNHHIVALSPGAPGTEEHLSFNDSNQSGMNYSSHEVDLEEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPTVVSSISEKRRLSMAYDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTYLSSKTAAGTPEWMAPEVIRGEQSDEKCDVFSFGVILWELVTLQQPWRQLNPSQCRLLQLLVLWAKG 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03782 629 Pfam Ethylene-responsive protein kinase Le-CTR1 77 279 - -
Vivi4g03782 629 Gene3D Transferase(Phosphotransferase) domain 1 488 625 - -
Vivi4g03782 629 FunFam Serine/threonine-protein kinase isoform 1 399 487 - -
Vivi4g03782 629 Gene3D Phosphorylase Kinase; domain 1 402 487 - -
Vivi4g03782 629 PRINTS Tyrosine kinase catalytic domain signature 571 581 IPR001245 GO:0004672|GO:0006468
Vivi4g03782 629 PRINTS Tyrosine kinase catalytic domain signature 483 496 IPR001245 GO:0004672|GO:0006468
Vivi4g03782 629 PRINTS Tyrosine kinase catalytic domain signature 524 542 IPR001245 GO:0004672|GO:0006468
Vivi4g03782 629 PRINTS Tyrosine kinase catalytic domain signature 590 612 IPR001245 GO:0004672|GO:0006468
Vivi4g03782 629 MobiDBLite consensus disorder prediction 1 34 - -
Vivi4g03782 629 Pfam Protein tyrosine and serine/threonine kinase 410 616 IPR001245 GO:0004672|GO:0006468
Vivi4g03782 629 SUPERFAMILY Protein kinase-like (PK-like) 389 618 IPR011009 -
Vivi4g03782 629 CDD STKc_MAP3K-like 415 616 - -
Vivi4g03782 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vivi4g03782 629 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 71 616 - -
Vivi4g03782 629 ProSitePatterns Protein kinases ATP-binding region signature. 415 436 IPR017441 GO:0005524
Vivi4g03782 629 ProSiteProfiles Protein kinase domain profile. 409 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03782 629 MobiDBLite consensus disorder prediction 58 77 - -
Vivi4g03782 629 SMART serkin_6 409 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03782 Vivi-Chr4 156719077 156731017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03782 32 616 MAP Kinase Kinase Kinase AT5G03730 54.870 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi4g03782 PK_Tyr_Ser-Thr 4.7e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03782 K14510 - gmx:100807496 1009.21