Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03663 ATGGATAACACTAACAAATCCAACACTTCCCTTTCCTACTCTACTCTCTTCAATATCGAGCCTTTGACGAACTTTCAACTTCCTCAACAAGATGATGAATTTGATTATTACGGGAATAGTAGTCAGGATGAAGAAAGCAGAGATAGTCGAGGTGGGGCAATTTCAAATCACACTAATGGGAATGTGCATTCGATGGATGTGAATTTGTTGAAGAAGAGGGTGAGGTCACAAAACAGTGACGACGAAGGCAAAGGAGGTTTCTACGGGACATACATGACAGAGGAGAGGTATCGGTCAATGCTGGGCGACCATGTCCAGAAATGCAAGAGGAGGTCTAAGGAATCCTCTAGTCCTGCCCAAAATTGTGCTGTTGTCCCGCATATGAAAAGTAATAATGAATTTAAAACTCAAAAGTTAGCGAATGATCATCAGGGAGGATTGCATGCTGCTGATACTTTATCCGGATGGTTGTACAATTCCAATTCTCAAAAACATGGAAACTATCGCAATGCAGATTTTGTGCAGAGAAATGTCACTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGGGATGGGGTCACATACAAAATTCCTCCAGTTTATGATAAGCTGGCTACATCGTTGAACCTTCCAAGTTTCTCGGATATCCATGTGGATGAATTTTACTTGAAAGGTACCTTGGATTTGGGGTCGTTGGCTGCAATGATGGCTTCTGACAAAAGGTTAGGAAATAAAAACCGAGCTGGCATGGGGGAACCCCTATCTCAATACGAATCTCTTCAGGCACGAATAAAGGCCATGTCAACTTCAAGTTCACCTCAAAAATTCAGTCTGAATGTGTCTGATATTGGTCTCAATTCATCCATTCCGGAAGGGGCTGCTGGAAGCATAAAGCGGTCTATTTTGACTGAGGGAGGTGTGTTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCTTACCCAAGAAGCAAAAGGTAAAGAAAGATCCTGCATCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATATGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTGCTCTTCATCGAAAGCAACTCATTGATGCTAAGAGGTGCTCAGAATACTGTCAAAGAGAGGTTAGAATGAAAATTAGTAGATCACTTAAATGGAATAGGGGTGCTAGCATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCCGAAGTGAGAAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGACGTGAACAGGAGCTCCGAGAAGCTAAGAGACAGCAGCAAAGGCTTAACTTTCTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAATAAGTCAGATTTACTATCTTCGGAAGCTTTACCTATGGTAGAGGAAAAAACAAATGATCAAGATGCACCGTTCGACTCATCAGATGCTGGGCCTAATGAGGAAGAAGATCCTGAAGAAGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTGTCTAAGCAGAAAAAGTTGACTGATGCTTTTGACAATGAATGTTTGAGGCTGCGACAGGTGGGTGAAGCAGATTCACTTACGCAAGAAGTTGCAGGAGTGAGTAACATTGATTTGCAAACCCCATCAACCATGCCTGTAGCATCCACAGTTCAAACACCTGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACTATACAAGCTATGGTTTTTTTAGCCCACTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCCGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTTAAACGGCTTCCGTATTGGGGAGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGGGAAGCTAAATTTCATGTTCTCATTACAAGCTATCAGCTATTAGTAGCTGACGAGAAGTATTTTCGTCGCGTGAAATGGCAGTACATGGTTTTAGATGAAGCTCAGGCAATCAAAAGCGCAAACAGTATAAGATGGAAAACACTTCTCAGCTTTAACTGTCGGAATCGTCTACTGCTGACTGGTACCCCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATTATGCCGACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAATCATGCAGAGCACGGGGGTACTTTGAATGAGCACCAGCTTAATAGACTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTCAAAAAAGATGTAGTTTCTGAGTTGACACAAAAAACCGAGGTTATGGTGCATTGCAAATTGAGCTCTCGACAGCAAGCTTTCTATCAAGCAATTAAGAACAAAATATCTCTTGCTGAACTGTTTGATAGTAATCGCGGACAGCTTAACGAGAAGAAGATTCTGAATTTGATGAATATTGTTATTCAATTGAGGAAGGTTTGTAACCATCCAGAGTTATTTGAAAGGAGTGAAGGAAGCACATACTTTTACTTTGGTGAGATTCCATATTCCCTTCCACCTCCTCCATTTGGCGAGTTGGAGGATGTATACTATGCTGGAGGTCTCAACCCCATAACATTTCAGATACCAAAGCTTGTGTATCAGGAGATTATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGCCGTGGTGTCTGCAGAGAAACATTTCAGAAACATTTTAATATTTTTAAACCAGAAAATATCCATCGATCTATTTTCTCTGAAAAAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCCAGAAGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGGCTATTATTTTCTATGATGAGATGGGAACAAGAAGTCTTTGACGATGTTGGAGACTATCTTGCAGAATATGTTGTAGATGATCCTGAATGTAATATCCTTGAAAAAGGTAAGGTGAGAGCTGTTATAAGAATGTTATTGCTGCCACCCAGATCTGAGACCAGGTTTCTTAAAAAAAAATTTGCAACTGGGCCCTCTCATGCTCCTTTCGAGGGATTGGTAGTCTCACATCAGGATAGGCTTTTATCTAATGCAAGGCTTCTTCACTCAGCATACACATACATCCCACCAACAAGAGCTCCACCTATTGGTGCTCATTGCTCGGATAGAAACTTCTCCTATAAAAAGATTGAAGAATTACATGATCCTTGGCTTAAGAGGTTTTTTGTGGGATTTGCACGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCACCATCATCCTCATTATTTAATTCAAGAGATCAATTCTGAATTACCTGTTTCACAGCCTGCAATGCAGTTAACTCACAGTATTTTTGGCTCCTCACCCCCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACACTTGATATATTACTGAAACGCTTACGGGCAGGAAATCATCGTATTCTCTTGTTTGCCCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATATAAGTATTTTAGACTTGATGGATCATCTACAATTCAGGATCGCAGGGACATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCAGCTGATACGGTCATATTTTATGAGAGTGATTGGAATCCAACATTAGATCTTCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACGGTTTATCGACTTATATGTAAAGAGACAGTTGAGGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTACTTCTTGATGATGTCCAATTGCAACAAAAGTTTAAGGAAATCCCTCTCCAGGTGAAAGATAAGCAAAAGAGAAAGCAATCTATGAAGGGTATTCGGGTCAGCGAAGATGGTGATGCATCTCTCGAAGATTTCACAAACTCTGTAGCTCAAAGTGCTGCAGATAATGATGCTTTCATGGAGCCAGAGGGGTTAAAGTCCAATAATAAAAAGAGAAAAGCAACTTCAAACAAACAAACTTCAAGATCAAAGAATTGTAAGAAGACGAGTGAACATGGAAGTATGCCTATAGATAAACTGGATGGTGCCCATCTAAATAATGATCCAGTGGGCCAGAAACCAAAGAGACCAAAGCGGGCAAAGAAGAATGTAAATGAAAAGTTTGAAGAAGGTTTTACTGGAACAACTGCCATATTCCCTGAGCAGACCCAATTTCCTCCTTCACATGATTTCACTTTTGGAGGTTCAAAAGCAGAGACAGTTCAAGACACACAAAGACATTGA 4617 0.4078 MDNTNKSNTSLSYSTLFNIEPLTNFQLPQQDDEFDYYGNSSQDEESRDSRGGAISNHTNGNVHSMDVNLLKKRVRSQNSDDEGKGGFYGTYMTEERYRSMLGDHVQKCKRRSKESSSPAQNCAVVPHMKSNNEFKTQKLANDHQGGLHAADTLSGWLYNSNSQKHGNYRNADFVQRNVTDRVMYEPSILEIGDGVTYKIPPVYDKLATSLNLPSFSDIHVDEFYLKGTLDLGSLAAMMASDKRLGNKNRAGMGEPLSQYESLQARIKAMSTSSSPQKFSLNVSDIGLNSSIPEGAAGSIKRSILTEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTALHRKQLIDAKRCSEYCQREVRMKISRSLKWNRGASIRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSSEALPMVEEKTNDQDAPFDSSDAGPNEEEDPEEAELKKEALKAAQEAVSKQKKLTDAFDNECLRLRQVGEADSLTQEVAGVSNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLKRLPYWGGLSERTVLRKSINPKDLYRREAKFHVLITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFGEIPYSLPPPPFGELEDVYYAGGLNPITFQIPKLVYQEIMQSSETLSSAVGRGVCRETFQKHFNIFKPENIHRSIFSEKTNVESGNFGFTHLMDLSPPEVAFLATGSFMERLLFSMMRWEQEVFDDVGDYLAEYVVDDPECNILEKGKVRAVIRMLLLPPRSETRFLKKKFATGPSHAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIGAHCSDRNFSYKKIEELHDPWLKRFFVGFARTSECNGPRKPNHHHPHYLIQEINSELPVSQPAMQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDKQKRKQSMKGIRVSEDGDASLEDFTNSVAQSAADNDAFMEPEGLKSNNKKRKATSNKQTSRSKNCKKTSEHGSMPIDKLDGAHLNNDPVGQKPKRPKRAKKNVNEKFEEGFTGTTAIFPEQTQFPPSHDFTFGGSKAETVQDTQRH 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03663 1538 Gene3D - 1175 1458 IPR027417 -
Vivi4g03663 1538 CDD SF2_C_SNF 1198 1330 - -
Vivi4g03663 1538 MobiDBLite consensus disorder prediction 1424 1538 - -
Vivi4g03663 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 818 IPR027417 -
Vivi4g03663 1538 Pfam Helicase conserved C-terminal domain 1210 1319 IPR001650 -
Vivi4g03663 1538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1210 1394 IPR001650 -
Vivi4g03663 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1387 IPR027417 -
Vivi4g03663 1538 Gene3D - 563 843 IPR038718 -
Vivi4g03663 1538 MobiDBLite consensus disorder prediction 490 518 - -
Vivi4g03663 1538 MobiDBLite consensus disorder prediction 1507 1531 - -
Vivi4g03663 1538 MobiDBLite consensus disorder prediction 1391 1410 - -
Vivi4g03663 1538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Vivi4g03663 1538 PANTHER HELICASE SRCAP-RELATED 86 541 - -
Vivi4g03663 1538 FunFam DNA helicase INO80-like protein 1178 1430 - -
Vivi4g03663 1538 FunFam Putative DNA helicase INO80 562 840 - -
Vivi4g03663 1538 MobiDBLite consensus disorder prediction 1455 1469 - -
Vivi4g03663 1538 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Vivi4g03663 1538 MobiDBLite consensus disorder prediction 31 67 - -
Vivi4g03663 1538 Pfam DNA-binding domain 351 478 IPR020838 GO:0003677
Vivi4g03663 1538 SMART helicmild6 1236 1319 IPR001650 -
Vivi4g03663 1538 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Vivi4g03663 1538 Coils Coil 427 466 - -
Vivi4g03663 1538 SMART ultradead3 586 781 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03663 Vivi-Chr4 155247269 155260992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03663 611 900 RAD5 or RAD16-like Gene Family AT5G43530 29.091 4.56e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi4g03663 SNF2_N 1.5e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03663 K11665 - gmx:100780615 2442.15