Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03662 ATGGATAACACTAACAAATCCAACACTTCCCTTTCCTACTCTACTCTCTTCAATATCGAGCCTTTGACGAACTTTCAACTTCCTCAACAAGATGATGAATTTGATTATTACGGGAATAGTAGTCAGGATGAAGAAAGCAGAGATAGTCGAGGTGGGGCAATTTCAAATCACACTAATGGGAATGTGCATTCGATGGATGTGAATTTGTTGAAGAAGAGGGTGAGGTCACAAAACAGTGACGACGAAGGCAAAGGAGGTTTCTACGGGACATACATGACAGAGGAGAGGTATCGGTCAATGCTGGGCGACCATGTCCAGAAATGCAAGAGGAGGTCTAAGGAATCCTCTAGTCCTGCCCAAAATTGTGCTGTTGTCCCGCATATGAAAAGTAATAATGAATTTAAAACTCAAAAGTTAGCGAATGATCATCAGGGAGGATTGCATGCTGCTGATACTTTATCCGGATGGTTGTACAATTCCAATTCTCAAAAACATGGAAACTATCGCAATGCAGATTTTGTGCAGAGAAATGTCACTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGGGATGGGGTCACATACAAAATTCCTCCAGTTTATGATAAGCTGGCTACATCGTTGAACCTTCCAAGTTTCTCGGATATCCATGTGGATGAATTTTACTTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCTTACCCAAGAAGCAAAAGGTAAAGAAAGATCCTGCATCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATATGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTGCTCTTCATCGAAAGCAACTCATTGATGCTAAGAGGTGCTCAGAATACTGTCAAAGAGAGGTTAGAATGAAAATTAGTAGATCACTTAAATGGAATAGGGGTGCTAGCATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCCGAAGTGAGAAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGACGTGAACAGGAGCTCCGAGAAGCTAAGAGACAGCAGCAAAGGCTTAACTTTCTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAATAAGTCAGATTTACTATCTTCGGAAGCTTTACCTATGGTAGAGGAAAAAACAAATGATCAAGATGCACCGTTCGACTCATCAGATGCTGGGCCTAATGAGGAAGAAGATCCTGAAGAAGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTGTCTAAGCAGAAAAAGTTGACTGATGCTTTTGACAATGAATGTTTGAGGCTGCGACAGGTGGGTGAAGCAGATTCACTTACGCAAGAAGTTGCAGGAGTGAGTAACATTGATTTGCAAACCCCATCAACCATGCCTGTAGCATCCACAGTTCAAACACCTGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACTATACAAGCTATGGTTTTTTTAGCCCACTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCCGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTTAAACGGCTTCCGTATTGGGGAGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGGGAAGCTAAATTTCATGTTCTCATTACAAGCTATCAGCTATTAGTAGCTGACGAGAAGTATTTTCGTCGCGTGAAATGGCAGTACATGGTTTTAGATGAAGCTCAGGCAATCAAAAGCGCAAACAGTATAAGATGGAAAACACTTCTCAGCTTTAACTGTCGGAATCGTCTACTGCTGACTGGTACCCCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATTATGCCGACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAATCATGCAGAGCACGGGGGTACTTTGAATGAGCACCAGCTTAATAGACTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTCAAAAAAGATGTAGTTTCTGAGTTGACACAAAAAACCGAGGTTATGGTGCATTGCAAATTGAGCTCTCGACAGCAAGCTTTCTATCAAGCAATTAAGAACAAAATATCTCTTGCTGAACTGTTTGATAGTAATCGCGGACAGCTTAACGAGAAGAAGATTCTGAATTTGATGAATATTGTTATTCAATTGAGGAAGGTTTGTAACCATCCAGAGTTATTTGAAAGGAGTGAAGGAAGCACATACTTTTACTTTGGTGAGATTCCATATTCCCTTCCACCTCCTCCATTTGGCGAGTTGGAGGATGTATACTATGCTGGAGGTCTCAACCCCATAACATTTCAGATACCAAAGCTTGTGTATCAGGAGATTATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGCCGTGGTGTCTGCAGAGAAACATTTCAGAAACATTTTAATATTTTTAAACCAGAAAATATCCATCGATCTATTTTCTCTGAAAAAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCCAGAAGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGGCTATTATTTTCTATGATGAGATGGGAACAAGAAGTCTTTGACGATGTTGGAGACTATCTTGCAGAATATGTTGTAGATGATCCTGAATGTAATATCCTTGAAAAAGGTAAGGTGAGAGCTGTTATAAGAATGTTATTGCTGCCACCCAGATCTGAGACCAGGTTTCTTAAAAAAAAATTTGCAACTGGGCCCTCTCATGCTCCTTTCGAGGGATTGGTAGTCTCACATCAGGATAGGCTTTTATCTAATGCAAGGCTTCTTCACTCAGCATACACATACATCCCACCAACAAGAGCTCCACCTATTGGTGCTCATTGCTCGGATAGAAACTTCTCCTATAAAAAGATTGAAGAATTACATGATCCTTGGCTTAAGAGGTTTTTTGTGGGATTTGCACGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCACCATCATCCTCATTATTTAATTCAAGAGATCAATTCTGAATTACCTGTTTCACAGCCTGCAATGCAGTTAACTCACAGTATTTTTGGCTCCTCACCCCCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACACTTGATATATTACTGAAACGCTTACGGGCAGGAAATCATCGTATTCTCTTGTTTGCCCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATATAAGTATTTTAGACTTGATGGATCATCTACAATTCAGGATCGCAGGGACATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCAGCTGATACGGTCATATTTTATGAGAGTGATTGGAATCCAACATTAGATCTTCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACGGTTTATCGACTTATATGTAAAGAGACAGTTGAGGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTACTTCTTGATGATGTCCAATTGCAACAAAAGTTTAAGGAAATCCCTCTCCAGGTGAAAGATAAGCAAAAGAGAAAGCAATCTATGAAGGGTATTCGGGTCAGCGAAGATGGTGATGCATCTCTCGAAGATTTCACAAACTCTGTAGCTCAAAGTGCTGCAGATAATGATGCTTTCATGGAGCCAGAGGGGTTAAAGTCCAATAATAAAAAGAGAAAAGCAACTTCAAACAAACAAACTTCAAGATCAAAGAATTGTAAGAAGACGAGTGAACATGGAAGTATGCCTATAGATAAACTGGATGGTGCCCATCTAAATAATGATCCAGTGGGCCAGAAACCAAAGAGACCAAAGCGGGCAAAGAAGAATGTAAATGAAAAGTTTGAAGAAGGTTTTACTGGAACAACTGCCATATTCCCTGAGCAGACCCAATTTCCTCCTTCACATGATTTCACTTTTGGAGGTTCAAAAGCAGAGACAGTTCAAGACACACAAAGACATTGA 4362 0.4051 MDNTNKSNTSLSYSTLFNIEPLTNFQLPQQDDEFDYYGNSSQDEESRDSRGGAISNHTNGNVHSMDVNLLKKRVRSQNSDDEGKGGFYGTYMTEERYRSMLGDHVQKCKRRSKESSSPAQNCAVVPHMKSNNEFKTQKLANDHQGGLHAADTLSGWLYNSNSQKHGNYRNADFVQRNVTDRVMYEPSILEIGDGVTYKIPPVYDKLATSLNLPSFSDIHVDEFYLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTALHRKQLIDAKRCSEYCQREVRMKISRSLKWNRGASIRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSSEALPMVEEKTNDQDAPFDSSDAGPNEEEDPEEAELKKEALKAAQEAVSKQKKLTDAFDNECLRLRQVGEADSLTQEVAGVSNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLKRLPYWGGLSERTVLRKSINPKDLYRREAKFHVLITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFGEIPYSLPPPPFGELEDVYYAGGLNPITFQIPKLVYQEIMQSSETLSSAVGRGVCRETFQKHFNIFKPENIHRSIFSEKTNVESGNFGFTHLMDLSPPEVAFLATGSFMERLLFSMMRWEQEVFDDVGDYLAEYVVDDPECNILEKGKVRAVIRMLLLPPRSETRFLKKKFATGPSHAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIGAHCSDRNFSYKKIEELHDPWLKRFFVGFARTSECNGPRKPNHHHPHYLIQEINSELPVSQPAMQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDKQKRKQSMKGIRVSEDGDASLEDFTNSVAQSAADNDAFMEPEGLKSNNKKRKATSNKQTSRSKNCKKTSEHGSMPIDKLDGAHLNNDPVGQKPKRPKRAKKNVNEKFEEGFTGTTAIFPEQTQFPPSHDFTFGGSKAETVQDTQRH 1453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03662 1453 MobiDBLite consensus disorder prediction 1339 1453 - -
Vivi4g03662 1453 Coils Coil 342 381 - -
Vivi4g03662 1453 CDD SF2_C_SNF 1113 1245 - -
Vivi4g03662 1453 Gene3D - 1084 1347 IPR027417 -
Vivi4g03662 1453 MobiDBLite consensus disorder prediction 1422 1446 - -
Vivi4g03662 1453 SMART helicmild6 1151 1234 IPR001650 -
Vivi4g03662 1453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 1301 IPR027417 -
Vivi4g03662 1453 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 517 688 IPR014001 -
Vivi4g03662 1453 PANTHER HELICASE SRCAP-RELATED 410 1360 - -
Vivi4g03662 1453 SMART ultradead3 501 696 IPR014001 -
Vivi4g03662 1453 FunFam DNA helicase INO80-like protein 1093 1345 - -
Vivi4g03662 1453 Gene3D - 500 742 IPR038718 -
Vivi4g03662 1453 ProSiteProfiles DBINO domain profile. 270 395 IPR020838 GO:0003677
Vivi4g03662 1453 MobiDBLite consensus disorder prediction 1306 1325 - -
Vivi4g03662 1453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 733 IPR027417 -
Vivi4g03662 1453 Gene3D - 743 812 IPR027417 -
Vivi4g03662 1453 Pfam Helicase conserved C-terminal domain 1125 1234 IPR001650 -
Vivi4g03662 1453 Pfam SNF2-related domain 520 807 IPR000330 GO:0005524|GO:0140658
Vivi4g03662 1453 MobiDBLite consensus disorder prediction 31 67 - -
Vivi4g03662 1453 MobiDBLite consensus disorder prediction 1370 1384 - -
Vivi4g03662 1453 FunFam Putative DNA helicase INO80 477 755 - -
Vivi4g03662 1453 Pfam DNA-binding domain 266 393 IPR020838 GO:0003677
Vivi4g03662 1453 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1125 1309 IPR001650 -
Vivi4g03662 1453 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03662 Vivi-Chr4 155247269 155260992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03662 526 815 RAD5 or RAD16-like Gene Family AT5G43530 29.091 4.67e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi4g03662 SNF2_N 1.4e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03662 K11665 - qsa:O6P43_006477 2027.68