Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03654 ATGGATGTGCTTAGTGTGGAAAAGAAGAAGAAGAAGAAGAAAAAGAAAAGCATGGGGAGAAGAAAGATTGAGATCAAGAAGATTGAGAATTTGGTTAGCAGACAAGCAACCTTCTCCAAGAGACAAAAGGAGTTGTTCAAGAAAGCCAAAGAACTCTCTATTCTTTGTGATGCGGAAGTTGCTGTCATCATATTCTCTAACACTGACAACCTCTACGAGTTTTCAAGCACAAGCATGGAAGAGACTCTTTCACGGTATGGTAGAAGAAGCACTGATTTGAATAGAGAAGTGCAACATCAGCCTAGTGATCAGTCTCAAGCACAAGTTGTGAAGGTTGATACTATCATTTCGCAGAAGAAAAAGGCTAGGAGAGAAATTAAAGCTCCGCGTAAGCAAGTTGATGAGATAGATAATAAAAGAAAGTCAGAGTTGGCTGAGGAGATTCCAGATACTTCCTCGCAGTTAGGGTTGTCGTCGCCAGTTTATCGCAGATCATTGAGGATGAGAGCTTGCAATCAGTAG 522 0.41 MDVLSVEKKKKKKKKKSMGRRKIEIKKIENLVSRQATFSKRQKELFKKAKELSILCDAEVAVIIFSNTDNLYEFSSTSMEETLSRYGRRSTDLNREVQHQPSDQSQAQVVKVDTIISQKKKARREIKAPRKQVDEIDNKRKSELAEEIPDTSSQLGLSSPVYRRSLRMRACNQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03654 173 MobiDBLite consensus disorder prediction 121 159 - -
Vivi4g03654 173 SUPERFAMILY SRF-like 19 91 IPR036879 GO:0003677|GO:0046983
Vivi4g03654 173 CDD MADS_MEF2_like 19 86 IPR033896 GO:0000977|GO:0045944
Vivi4g03654 173 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g03654 173 Gene3D - 32 114 IPR036879 GO:0003677|GO:0046983
Vivi4g03654 173 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 121 - -
Vivi4g03654 173 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Vivi4g03654 173 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Vivi4g03654 173 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Vivi4g03654 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Vivi4g03654 173 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Vivi4g03654 173 MobiDBLite consensus disorder prediction 121 147 - -
Vivi4g03654 173 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03654 Vivi-Chr4 155085057 155086492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03654 18 100 MADS-box Gene Family AT3G57390 64.706 2.55e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi4g03654 SRF-TF 7.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03654 - - vvo:131598127 230.335