Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03649 ATGGCTTCTTCTTCTGAGTCAAACTCAAAGCATCGTGTTTTTCTTAACTTCAGAGGAGAAGATACTAGATGCAATTTTACAAGCCATCTCTATGCTGCATTTTGTGGAAAAAACATCCAAACATTCATGGATGATGAGCAAATTCAGAGAGGAGATAGTATCTCACCAACTCTCCTCTCAGCTATTGAAAACTCCAACATTTGCGTAACAATTTTCTCGCAGGATTATGCTTCTTCTACATGGTGTTTGGATGAACTCGCGAAGATCATTGAATGCAATGACAAGAAAAAACTTGTTGTCATACCTGTTTTCTATCACATTGATCCATCTCATGTGAGACACCAGAGGGGAACCTATCAAGATGCCTTTGCCAAACACGAGGAGCGTTTCAGTGACAATCTAATCAAGGTACACAAGTGGAGAACTTCCTTGCATAAAGCTGCTAACTTAGCAGGATGGATTTCCTCCAAAAATAGGTCTGAGGCAGTTCTAGTTAAAGAAATTGTTGAAGTTATATTAGATAAACTGAAATGTATGGGCCCAAGTGTTCTAAAGAAGGGGCTTGTTGGAATTTCTCGACACATTGCACATGTGGAATCATTGTTATGCTCTGGGCCAGCTGACATGCATATTATTGGAATTTGGGGTATGGGCGGTATAGGCAAGACAACCATTGCAGATGCTGTGTTTGCAAAAGTCTCTTATCAATACGAGGGATGTTACTTTGCTGCCAATGTCAGGGAAAAATGGAGAAATCAAATAAAGTTGCGGAATAAAGTTCTGGCACAAGTGTTAGGGGACCAAAGCATTGATATTAACACCCCTACTATGAGTTCCAGGTTTGTGGTTGAAAGACTTAAATGTAAAAAGGTCCTTGTCGTTCTTGATGACGTGAGTTTATCCAAACAAATAGAATATCTTGTTGGAGGGCGAGATTGGTTTGGACCAGGCAGTCGAATCATAGTGACAACCCGAAACAAAGAAGTATTTAATGGTGGAGTTGATGGAGTATACCAAGTGATGGCATTGAATTCTCGTGAAGCACTGGAGGTTTTTAGCTTCAATGCCTTTCAACAAGACTGTCCACCAATGGAATACCAATACTTGACAGAAAGGGCAGTAGACTATGCTAAGGGCATTCCTCTAGCTCTTAAAATTCTGGGATCACATCTTCGTTTCAAACGACCAAAAGAACGGGAGAGTGCATTAGAAAAACTGAAGAAAATTCCCAAAGCTGAAATTTATGATGTGTTGAGATTGAGTTATGAAGGATTAGACCCTGAAGAGCAGAATATATTTTTAGACATAGCCTGCTGTTTGAAAGGAGAAACAAAAAGCCAAATAGCAAGTATATTAGATGCTTGTGGCTTCTCTACGGAAATTGGGATGAGAACCCTTGAAGACAAGTCTCTTGTAACTGTTTCTAAAAACAACACAGTACATATGCATGATTTGTTACAAGAAATGGGACGATATGTAGAATATATGAAAAAGCCTGGAGAACGAAGTCGGTTGTGGGATCCTAAAGAAGTTTACAATGTCCTAAAGTATTGCAAGGGTATTGAAAGTATTGAATGCATTGTCTTGGACATGTCACAAATCAAAGAGTTGACATTAAGCCCTCAAACATTTCAAAGAATGTACAGGCTAAGGCTTTTGAAATTTTATATACCCTCAGGCGATACGAGAAGAATCAATGTGCATATTTCCAGAGGTCTTGATTGCATGCCTGATGAAATAAGTTATTCAGATGGGACTGTTTTCCATTTAAATCCTTGCCAGCATGGTTTTGTGCTGAGAAGCTTGTTGAACTTGATATAA 1821 0.3904 MASSSESNSKHRVFLNFRGEDTRCNFTSHLYAAFCGKNIQTFMDDEQIQRGDSISPTLLSAIENSNICVTIFSQDYASSTWCLDELAKIIECNDKKKLVVIPVFYHIDPSHVRHQRGTYQDAFAKHEERFSDNLIKVHKWRTSLHKAANLAGWISSKNRSEAVLVKEIVEVILDKLKCMGPSVLKKGLVGISRHIAHVESLLCSGPADMHIIGIWGMGGIGKTTIADAVFAKVSYQYEGCYFAANVREKWRNQIKLRNKVLAQVLGDQSIDINTPTMSSRFVVERLKCKKVLVVLDDVSLSKQIEYLVGGRDWFGPGSRIIVTTRNKEVFNGGVDGVYQVMALNSREALEVFSFNAFQQDCPPMEYQYLTERAVDYAKGIPLALKILGSHLRFKRPKERESALEKLKKIPKAEIYDVLRLSYEGLDPEEQNIFLDIACCLKGETKSQIASILDACGFSTEIGMRTLEDKSLVTVSKNNTVHMHDLLQEMGRYVEYMKKPGERSRLWDPKEVYNVLKYCKGIESIECIVLDMSQIKELTLSPQTFQRMYRLRLLKFYIPSGDTRRINVHISRGLDCMPDEISYSDGTVFHLNPCQHGFVLRSLLNLI 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03649 606 Gene3D - 181 334 IPR027417 -
Vivi4g03649 606 PRINTS Disease resistance protein signature 377 391 - -
Vivi4g03649 606 PRINTS Disease resistance protein signature 285 299 - -
Vivi4g03649 606 PRINTS Disease resistance protein signature 211 226 - -
Vivi4g03649 606 Pfam TIR domain 10 190 IPR000157 GO:0007165
Vivi4g03649 606 SUPERFAMILY "Winged helix" DNA-binding domain 413 516 IPR036390 -
Vivi4g03649 606 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 153 IPR035897 -
Vivi4g03649 606 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 595 IPR044974 GO:0006952
Vivi4g03649 606 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Vivi4g03649 606 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vivi4g03649 606 SMART till_3 10 150 IPR000157 GO:0007165
Vivi4g03649 606 Gene3D - 342 426 IPR042197 -
Vivi4g03649 606 Gene3D - 4 180 IPR035897 -
Vivi4g03649 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 436 IPR027417 -
Vivi4g03649 606 Pfam NB-ARC domain 198 407 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03649 Vivi-Chr4 154978015 154980876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03649 18 605 WRKY Transcription Factor Family AT4G12020 30.808 2.51e-75 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03649 - - vvo:131600016 1190.64