Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03648 ATGGATAACACTAACAAATCCAACACTTCCCTTTCCTACTCTACTCTCTTCAACATCGAGCCTTTGATGAACTTTCAACTTCCAATACACGATGATGAATTTGATTATTACGGGAATAGTAGTCAGGATGAAGATAGCAGAGATAATGGAGGTGGGGCAATTTCAAATCACACTAATGGGAATATGCATTCGATGGATGTGAATTTGTTGAAGAAGAGGGTGAGGTCACAAAAAAGTGACGACGAAGGCAAAGGAGGTTTTTACGGGACATACATGACAGAGGAGAGGTATCGGTCAATGCTGGGCGATCATGCTCAGAATTACAAGAGGAGGTCTAAGGATGCATCCTCTACTCCTGCCCAAAATTGTGCTGTTGTCCCGCTTATGAAAAGTAATAATGGCGTTAAAACTCAGAAGTTAGCGAATGATCATCAGGGAGGATTGCATGCTGCTGATACTTTATCCGGATGGTTGTATAATTCCAATTCTCAAAAACATGGAAACTATCGCAATGCAGATTTTGTGCAGAGTAATGGCACTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGGGATGGGGTCACATACAAAATTCCTCCAGTTTATGATAAGCTGGCTACGTCGTTGAACCTTCCAAGTTTCTCGGATATCCATGGGGATGAATTTTACTTGAAGGGTACCTTGGATTTGGGGTCGTTGGCTGCAATGATGGCTTCTGACAAAAGGTTAGGAAATAAAAACCCAGCTGGCATGGGTGAACCCCTATCTCAATACGAATCTCTTCAGGCACGAATAAAGGCCATGTCAACTTCAAGTTCACCTCAAAAATTCAGTCTGAATGTGTCTGATATTGGTCTCAATTCATCCATTCCGGAAGGGGCTGCTGGAAGCATAAAGCGGTCTATTTTGTCTGAGGGAGGTGTGTTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCTTACCCAAGAAGCAAAAGGTAAAGAAAGATCCTGCATCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATATGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTGCTCTTCATCGAAAGCAACTCATTGATGCTAAGAGGTGCTCAGAATACTGTCAAAGAGAGGTTAGAATGAAAATTAGTAGATCACTTAAATGGAATAGGGGTGCTAGCATTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCCGAAGTGAGAAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGACGTGAACAGGAGCTCCGAGAAGCTAAGAGACAGCAGCAAAGGCTTAACTTTCTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAATAAGTCAGATTTACTATCTTCGGAAGCTTTACCTATGGTAGAGGAAAAAACAAATGATCAAGATGCACCGTTCGACTCATCAGATGCTGGGCCTAATGAGGAAGAAGATCCTGAAGAAGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTGTCTAAGCAGAAAAAGTTGACTGATGCTTTTGACAATGAATGTTTGAGGCTGCGACAGGTGGGTGAAGCAGATTCACTTACGCAAGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCATCAACCATGCCTGTAGCATCCACAGTTCAAACACCCGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACTATACAAGCTATGGTTTTTTTAGCCCACTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCCGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTTAAACGACTTCCGTATTGGGGAGGGCTTTCTGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGGGAAGCTAAATTTCATGTTCTCATTACAAGCTATCAGCTATTAGTAGCTGACGAGAAGTATTTTCGTCGCGTGAAATGGCAGTACATGGTTTTAGATGAAGCTCAGGCAATCAAAAGCGCAAACAGTATAAGATGGAAAACACTTCTCAGCTTTAACTGTCGGAATCGTCTACTGCTGACTGGTACCCCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAATCATGCAGAGCACGGGGGTACTTTGAATGAGCACCAGCTTAATAGACTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTCAAAAAAGATGTAGTTTCTGAGTTGACACAAAAAACCGAGGTTATGGTGCATTGCAAATTGAGCTCTCGACAGCAAGCTTTCTATCAAGCAATTAAGAACAAAATATCTCTTGCTGAACTGTTTGATAGTAATCGCGGACAGCTTAACGAGAAGAAGATTCTGAATTTGATGAATATTGTTATTCAATTGAGGAAGGTTTGTAACCATCCAGAGTTATTTGAAAGGAGTGAAGGAAGCACATACTTTTACTTTGGTGAGATTCCATATTCCCTTCCACCTCCTCCATTTGGCGAGTTGGAGGATGTATACTATGCTGGAGGTCTCAACCCCATAACATTTCAGATACCAAAGCTTGTGTATCAGGAGATTATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGCCGTGGTGTCTACAGAGAAACATTTCAGAAACATTTTAATATTTTTAAACCAGAAAATATCCATCGATCTATTTTCTCTGAAAAAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCCAGAAGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGGCTATTATTTTCTATGATGAGATGGGAACAAAAAGTCTTTGACGATGTTGGAGACTATCTTGCAGAATATGTTGTAGATGATCCTGAATGTAATATCCTTGAAAAAGGTAAGGTGAGAGCTGTTATAAGAATGTTATTGCTGCCGCCCAGATCTGAGACCAGGTTTCTTAAAAAAAAATTTGCAACTGGGCCCTCCCATGCTCCTTTCGAGGGATTGGTAGTCTCACATCAGGATAGGCTTTTATCTAATGCAAGGCTTCTTCACTCAGCATACACATACATCCCACCAACAAGAGCTCCACCTATTGGTGCTCATTGCTCGGATAGAAACTTCTCCTATAAAAAGATTGAAGAATTACATGATCCTTGGCTTAAGAGGTTTTTTGTGGGATTTGCACGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCACCATCATCCTCATTATTTAATTCAAGAGATCAATTCTGAATTACCTGTTTCACAGCCTGCAATGCAGTTAACTCACAGTATTTTTGGCTCCTCACCCCCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACACTTGATATATTACTGAAACGCTTACGGGCAGGAAATCATCGTATTCTCTTGTTTGCCCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATATAAGTATTTTAGACTTGATGGATCATCTACAATTCAGGATCGCAGGGACATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCAGCTGATACGGTCATATTTTATGAGAGTGATTGGAATCCAACATTAGATCTTCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACGGTTTATCGACTTATATGTAAAGAGACAGTTGAGGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTACTTCTTGATGATGTTCAATTGCAACAAAAGTTTAAGGAAATCCCTCTCCAGGTGAAAGATAAGCAAAAGAGAAAGCAATCTATGAAGGGTATTCGGGTCAGCGAAGATGGTGATGCATCTGTCGAAGATTTCACAAACTCTGTAGCTCAAAGTGCTGCAGATAATGATGCTTTCATGGAGCCAGAGGGGTTAAAGTCCAATAATAAAAAGAGAAAAGCAACTTCAGACAAACAAACTTCAAGATCAAAGAATTGTAAGAAGACGAGTGAACATGGAAGTATGCCTATAGATAAACTGGATGGTGCCCATCTAAATAATGATCCAGCGGGCCAGAAACCAAAGAGACCAAAGCGGGCAAAGAAGAATGTAAATGAAAAGTGTGAAGAAGGTTTTACTGGAACAACTACCATATTCCCTGAGCAGACCCAATTTCCTCCTTCACATGATTTCACTTTTGGAGGTTCTAAAGCAGAGACAGTTCAAGACACATGA 4611 0.4084 MDNTNKSNTSLSYSTLFNIEPLMNFQLPIHDDEFDYYGNSSQDEDSRDNGGGAISNHTNGNMHSMDVNLLKKRVRSQKSDDEGKGGFYGTYMTEERYRSMLGDHAQNYKRRSKDASSTPAQNCAVVPLMKSNNGVKTQKLANDHQGGLHAADTLSGWLYNSNSQKHGNYRNADFVQSNGTDRVMYEPSILEIGDGVTYKIPPVYDKLATSLNLPSFSDIHGDEFYLKGTLDLGSLAAMMASDKRLGNKNPAGMGEPLSQYESLQARIKAMSTSSSPQKFSLNVSDIGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTALHRKQLIDAKRCSEYCQREVRMKISRSLKWNRGASIRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSSEALPMVEEKTNDQDAPFDSSDAGPNEEEDPEEAELKKEALKAAQEAVSKQKKLTDAFDNECLRLRQVGEADSLTQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLKRLPYWGGLSERTVLRKSINPKDLYRREAKFHVLITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFGEIPYSLPPPPFGELEDVYYAGGLNPITFQIPKLVYQEIMQSSETLSSAVGRGVYRETFQKHFNIFKPENIHRSIFSEKTNVESGNFGFTHLMDLSPPEVAFLATGSFMERLLFSMMRWEQKVFDDVGDYLAEYVVDDPECNILEKGKVRAVIRMLLLPPRSETRFLKKKFATGPSHAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIGAHCSDRNFSYKKIEELHDPWLKRFFVGFARTSECNGPRKPNHHHPHYLIQEINSELPVSQPAMQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDKQKRKQSMKGIRVSEDGDASVEDFTNSVAQSAADNDAFMEPEGLKSNNKKRKATSDKQTSRSKNCKKTSEHGSMPIDKLDGAHLNNDPAGQKPKRPKRAKKNVNEKCEEGFTGTTTIFPEQTQFPPSHDFTFGGSKAETVQDT 1536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03648 1536 MobiDBLite consensus disorder prediction 1392 1536 - -
Vivi4g03648 1536 Pfam Helicase conserved C-terminal domain 1211 1320 IPR001650 -
Vivi4g03648 1536 PANTHER HELICASE SRCAP-RELATED 95 535 - -
Vivi4g03648 1536 SMART helicmild6 1237 1320 IPR001650 -
Vivi4g03648 1536 MobiDBLite consensus disorder prediction 43 63 - -
Vivi4g03648 1536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 819 IPR027417 -
Vivi4g03648 1536 Gene3D - 563 844 IPR038718 -
Vivi4g03648 1536 SMART ultradead3 587 782 IPR014001 -
Vivi4g03648 1536 FunFam Putative DNA helicase INO80 563 841 - -
Vivi4g03648 1536 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Vivi4g03648 1536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 603 774 IPR014001 -
Vivi4g03648 1536 Pfam DNA-binding domain 352 479 IPR020838 GO:0003677
Vivi4g03648 1536 Pfam SNF2-related domain 606 893 IPR000330 GO:0005524|GO:0140658
Vivi4g03648 1536 MobiDBLite consensus disorder prediction 1501 1536 - -
Vivi4g03648 1536 MobiDBLite consensus disorder prediction 1392 1412 - -
Vivi4g03648 1536 MobiDBLite consensus disorder prediction 1436 1470 - -
Vivi4g03648 1536 FunFam DNA helicase INO80-like protein 1179 1431 - -
Vivi4g03648 1536 Coils Coil 428 467 - -
Vivi4g03648 1536 MobiDBLite consensus disorder prediction 491 520 - -
Vivi4g03648 1536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1388 IPR027417 -
Vivi4g03648 1536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1211 1395 IPR001650 -
Vivi4g03648 1536 Gene3D - 1177 1428 IPR027417 -
Vivi4g03648 1536 CDD SF2_C_SNF 1199 1331 - -
Vivi4g03648 1536 MobiDBLite consensus disorder prediction 35 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03648 Vivi-Chr4 154955597 154968935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03648 612 901 RAD5 or RAD16-like Gene Family AT5G43530 29.091 5.30e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi4g03648 SNF2_N 1.6e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03648 K11665 - gmx:100780615 2442.92