Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03645 ATGGCACAAGTTGCAAAGGATTGCACAAATCAAGACTCGAAAGGATGTCCAAGAATGAAAGTTGTTGTGGCTTCACTTATGAAACTAAATTCTACCATTGAAGATGAAACTATGATGCAATACAGTCGCTTTAACTCCGTTGAATCTAGGTACACCGTCCGATCCTTTGGTTATAGAAGGAATGAAAAGATGGCATGTTATGTCACTGTTAGCGGCGACAAGGCAATGCAGCTTTTAGAAAGCGGGTTGAAAGTCAAAGAATATGAGTTGTTGAGGAGAAATTCAACGATATTGGATGTTTTGGCTTTGGATCCGTCCACTGACATTCAAGGAATGGATTTCTTTGTGGTGTTGGAGCGCCCTGGTTACTGTGTTGGACGTCGTCGCCGGTGCAAGGCACATGTTGGATTTCAGTATCGTGTCACAGAGGATGATGCCATGAAGTGGTGCTGTAGTGGTGTTTTATGTCTATAG 474 0.4283 MAQVAKDCTNQDSKGCPRMKVVVASLMKLNSTIEDETMMQYSRFNSVESRYTVRSFGYRRNEKMACYVTVSGDKAMQLLESGLKVKEYELLRRNSTILDVLALDPSTDIQGMDFFVVLERPGYCVGRRRRCKAHVGFQYRVTEDDAMKWCCSGVLCL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03645 157 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 48 150 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vivi4g03645 157 SUPERFAMILY RL5-like 48 150 IPR022803 -
Vivi4g03645 157 Gene3D - 18 154 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03645 Vivi-Chr4 154935195 154936919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03645 48 149 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 69.298 5.64e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03645 K02868 - han:110937160 156.762