Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03639 ATGGTGCTTAGTGTGGAAAAGAAGAAGAAGAAGAAAAAGAAAAGCATGGTGAGAAGAAAGATTGAGATCAAGAAGATTGAGAATTTGGTTAGCAGACAAGCAACCTTCTCCAAGAGACAAAAGGAGTTGTTCAAGAAAGCCAAAGAACTCTCTATTCTTTGTGATGCGGAAGTTGCTGTCATCATATTCTCTAACACTGACAACCTCTACGAGTTTTCAAGCACAAGCATGGAAGAGACTCTTTCACGGTATGGTGGAAGAAGCATTGATTTGAATAGAGAAGTGCAACATCAGCCTAGTGACCAGTCTCAAGCACAAGTTGTGGAGGTTGATGCTACCATTTCACAGAAGAAAAAGGTTGATGAGATAGATAATAAAAGAAAGTCAGAGTTGGATGAGGAGATTCCAGATACTTCCTCGCAGCTAGGGTATGTTATGTATATTACTCATGTTGTCGTCACCAGTTCATCGCAGATCATTGAGGATGAGAGCTTGCAATCAATAGGGAAGTCAAGAAGTAGCTTCACAGTGACATATTTGGAGTTGCCATTTGAAATTGAAACCCTTTGTTAG 573 0.3997 MVLSVEKKKKKKKKSMVRRKIEIKKIENLVSRQATFSKRQKELFKKAKELSILCDAEVAVIIFSNTDNLYEFSSTSMEETLSRYGGRSIDLNREVQHQPSDQSQAQVVEVDATISQKKKVDEIDNKRKSELDEEIPDTSSQLGYVMYITHVVVTSSSQIIEDESLQSIGKSRSSFTVTYLELPFEIETLC 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03639 190 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vivi4g03639 190 Gene3D - 30 135 IPR036879 GO:0003677|GO:0046983
Vivi4g03639 190 SUPERFAMILY SRF-like 18 88 IPR036879 GO:0003677|GO:0046983
Vivi4g03639 190 CDD MADS_MEF2_like 18 84 IPR033896 GO:0000977|GO:0045944
Vivi4g03639 190 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 118 - -
Vivi4g03639 190 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Vivi4g03639 190 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vivi4g03639 190 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vivi4g03639 190 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vivi4g03639 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03639 Vivi-Chr4 154791358 154792954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03639 16 85 MADS-box Gene Family AT3G57390 71.429 3.36e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi4g03639 SRF-TF 8.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03639 - - vvo:131598127 350.903