Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03638 ATGGGGAGAGGAAAAATTGAGATAAAGAAGATTGAGAATTTGAATAACAGACAGGTTACATTTTCAAAGAGACGCAATGGTTTGATTAAGAAGGCCAAAGAGTTGTCTGTTCTTTGTGATGCCGAGGTTGCTGTTTTGATTTATTCTGCCACTGGCAAACTCTACCAGTTTTCAAGCACAAGCATGGAGCACACCCTTTCAAGGTATGATGATACTAGAGGTCTTGATTTGAATAAAGAAGAACAACAGCAGCAACAGCAACCTACTGAACAACCTAGAGCACAAGTTGTGGAGCATGATACTACTACTACTACCCATCTGCAGGAAGAAATAACAAAACTTCGTTCAGCTTACTTAAGAATGAGCGGTAAGGAGCTTGATGGATTGAGCTTTAAAGAACTGCAGCACCTCGAAGATCAACTATGTGAAGGGGTATTAGCTGTCAAAAACAAGAAGGAACAAATGCTTGTAGAACAACTTAAGAGATCCAGATTACAGGAGCAAAAGGCTATGATGGAGAACGAAGCTCTTCGGAAACAGTTTGAAGAGATAGAAAAGAAAAGAAAGACAGAGTTGCTTGAATATCATTCATTGGATCCAAAACCAGTTTTGAATTCAGGTTCAGAGGATGAAGAGATTTCAGATACTTGCTTACAGTTAGGGTTGTCATCAGATTATGGTCGCAAGAGGAAAGCATTGAAGATAGAACCTTGCAACGATTCAGGAAGTCAAGTGGCTTCACAGTGA 747 0.3976 MGRGKIEIKKIENLNNRQVTFSKRRNGLIKKAKELSVLCDAEVAVLIYSATGKLYQFSSTSMEHTLSRYDDTRGLDLNKEEQQQQQQPTEQPRAQVVEHDTTTTTHLQEEITKLRSAYLRMSGKELDGLSFKELQHLEDQLCEGVLAVKNKKEQMLVEQLKRSRLQEQKAMMENEALRKQFEEIEKKRKTELLEYHSLDPKPVLNSGSEDEEISDTCLQLGLSSDYGRKRKALKIEPCNDSGSQVASQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03638 248 Pfam K-box region 102 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi4g03638 248 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Vivi4g03638 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi4g03638 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi4g03638 248 ProSiteProfiles K-box domain profile. 97 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi4g03638 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Vivi4g03638 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi4g03638 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi4g03638 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi4g03638 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi4g03638 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi4g03638 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi4g03638 248 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vivi4g03638 248 Coils Coil 160 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03638 Vivi-Chr4 154784366 154786018 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03638 1 230 MADS-box Gene Family AT5G13790 43.750 4.82e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi4g03638 K-box 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03638 - - gmx:100792278 314.309