Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03615 ATGGCTTCCTTTTCCATCTCCATTGGTGAAATTTCATGGAGTTGTCTCAACAATTTTGATTTCACTTCTTTATGCTCTCAAAGGACCTTACTAGACACAATCAACATACTCATTCTCTGTGTGTACTTCACATCTTTGCTTATCACTTTCATCACAAAAACTTCATCAAATCAAAGCCACAGGAAATCCTGGATTTTCCTTATTACCTCAATCTGTTGTGCTATTATTAGCATTGCATTTTTCACTATTGGATCGTCCAATATCATTGCTAAATCTGAGCCACTCAAATGGTTAACTTGCATTATCAGAGGAATCATTTGGATTTCTTTTGCTATTTCTTTGATTCTTCAGAGAGTCAAATGGATAAGAATATTAAACTCTATATGGTGGCTGTCTTCTTGTGTATTGGTTTCATCTCTCAACATTGAAATTCTATTCCGAAATCATGCAATTGAAACTTTTGATATTGTACAGTGGCTTGTACATTTCCTTCTTCTATATTGTGCCTTTAAAAATCTTGGTTATTTCAAAACTCATGGTGTCCAAGAAGGTTTATCTGAGCCACTCTTAGCTCAAAAAGTCGAAACAAAACAAACTGGACTTGGTCATGCTTCTTTTCTCAGCAAGTTGGTTTTCTCTTGGATGAATTCTTTACTGTTTTTAGGTTACTCAAAGCCACTAGATCTTGAACAAATCCCTTCCCTTGTTTCTGAAGATGAAGCAAACACAGCCTATCAAAAATTTGTCCATGCCTGGGAATCACTTGTTAGAGAGAGACCAAAGAATAATACAAAGAGTTTGGTTCTTTGGTCTATAGTTAGAACTTACTTAAGAGAAAACATATTAATAGCATTTTACGGATTAATCAGAACTGTTTCTGTTGCAGTTTCACCTCTAATACTCTATGCTTTTGTTAACTACTCAAATAGAGCTGAGCCAGATCTTAGACAAGGTTTTTCCATAGTTGGTTTTTTGATAGTCACCAAAGTGTTTGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGGTTGAAAATGAGATCAGCTCTTATGGTAGCAGTTTATCGAAAGCAGCTAAAGCTTTCTAGCTCAGCAAGATCACGGCATGCGGCTGGAGAAATTGTGAACTACATTGCTGTTGATGCATATAGAATGGGAGAGTTTCCATGGTGGTTTCATATAACATGGACTTCTGCATTGCAACTTGTACTTTCCATTGGTATCCTTTTTGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTGGTCCCTCTTATTATATGCGGATTTCTTAATGTACCATTTGCAAGGATCCTACAAAATTGCCAGTCACAGTTTATGATTGCACAGGACGAGCGTCTTCGATCAACTTCAGAGATTCTAAATAGCATGAAGATCATTAAGTTGCAATCATGGGAAGAAAAATTCAAGAACTTAGTCCAGTCACTACGCGATAAAGAGTTCGTATGGTTGTCTAAGGCACAGATCTTGAAAGCTTCTAGCTCATTTCTTTATTGGATGTCTCCTACTGTTATTTCTGCTGTTGTTTTTCTTGGATGTGCTGTTACCAAGAGTGCACCATTGAATGCTGAAACTATTTTCACAGTTCTTGCAACACTGAGGAACTTGGGAGAGCCTGTTAGAATGGTCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTCGATCGTCTAAATAACTTTTTGCTCGATGAAGAACTAAACAATGATGATAGTGAAAGAAAATTCAAGGAATGTTCGATTAATGCCGTAGAAATACAAGATGGTAACTTCATTTGGGATCATGAATCTGTGTCTCCAACTTTAGCAGATGTGAATTTAGAAATCAAATGGAAACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATATCAGGAACTGTTAATGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAACCAATGGATAAAACAAGATACGAGAAAGCAATTAAAGCATGTGCCTTAGATAAGGATATAAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGAATTAACATGAGTGGAGGACAAAAACAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCTGTTGATGCACATACAGCTGCAATACTATTCAATGAATGTGTCATGACTGCTTTAAGAGAGAAAACTGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCGGATGTTGATACTATCTTGGTAATGGAGGGAGGAAAAGTTATTCAATCAGGTAATTATGAGAGTCTCCTAACAGCAGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAATTACTGAGTTGAATCAAGACAATGAAAATAAAAGAGATTCTGAAGTCGAAGTTTTGTCTAATCCTCAAAACTCTCATGGTTCTTATCTCACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCAATTGGTGCACAACTTACACAAGAGGAAGAAAAAGTGATCGGTAATGTTGGATGGAAGCCATTTTGGGATTATATAAATTATTCCAAAGGGACATTCATGTTGTGTTTCATCATGTTAGCTCAATTTGCTTTCATGGCTTTTCAAACTGCATCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTTACTAATGCCACCTTGATTGAAATTTATGCATTAATTTCTTTTGCTAGTGCTGCTTTTGTATATGTAAGGTCTTACTTGACTGCACTTCTTGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACAAGAGCTTCATCAGATTTGAGTATATTGGACTTTGATATACCGTATTCCATCACCTTTGTATTATGTGTAGCACTTGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATACATTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCATCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACACATTTTTCAAAAACTACTTAACACTTGTAGACACAGATGCTTCGTTGTTCTTTCATTCCAATGCGTCAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCATCTTTGTTGCTTATTCTACTTCCTCATGGATATGTATCCCCAGGCCTTGTGGGACTATCTCTTTCTTATGCTTTTACCTTGACAGGAGCCCAAATATTTTGGAGTAGATGGTTTTCCAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCCTGCTATTGTGGATAGTAATAGACCGCCATCTTCGTGGCCTTCCAAGGGAAAGATTGATCTTCAAGGCTTGGAGATCAAATATCGTCCTAATGCTCCGTTAGTTCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTGATTAGTGCTCTGTTTCGCTTAGTTGAGCCATCAAGAGGTGATATTCTCATAGATGGGATGAACATTTGCTCAATTGGGTTGAAGGATTTGAGAATGAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTACTCAGATGATGATATCTGGAAGGCTATAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGTTACCAAGTCTCCTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGTTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTCCTGGATGAAGCTACGGCCTCCATTGACTCTGCTACAGATGCCATTTTACAAAGAGTAATCAGACAAGAATTTGAAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTTATGGTTTTATCATATGGGAAACTGATGGAATATGATGAGCCTTCAAAGCTAATGGAAACCAACTCTTCATTCTCTAAGCTGGTTGCTGAATATTGGTCCAGTTGCAGGAAGAATTCATTCCCAAATATTAGCAGACAACAATAA 4404 0.3751 MASFSISIGEISWSCLNNFDFTSLCSQRTLLDTINILILCVYFTSLLITFITKTSSNQSHRKSWIFLITSICCAIISIAFFTIGSSNIIAKSEPLKWLTCIIRGIIWISFAISLILQRVKWIRILNSIWWLSSCVLVSSLNIEILFRNHAIETFDIVQWLVHFLLLYCAFKNLGYFKTHGVQEGLSEPLLAQKVETKQTGLGHASFLSKLVFSWMNSLLFLGYSKPLDLEQIPSLVSEDEANTAYQKFVHAWESLVRERPKNNTKSLVLWSIVRTYLRENILIAFYGLIRTVSVAVSPLILYAFVNYSNRAEPDLRQGFSIVGFLIVTKVFESLSQRHWFFNSRRSGLKMRSALMVAVYRKQLKLSSSARSRHAAGEIVNYIAVDAYRMGEFPWWFHITWTSALQLVLSIGILFGVVGIGALPGLVPLIICGFLNVPFARILQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVQSLRDKEFVWLSKAQILKASSSFLYWMSPTVISAVVFLGCAVTKSAPLNAETIFTVLATLRNLGEPVRMVPEALSIMIQVKVSFDRLNNFLLDEELNNDDSERKFKECSINAVEIQDGNFIWDHESVSPTLADVNLEIKWKHKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTFAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMTALREKTVILVTHQVEFLSDVDTILVMEGGKVIQSGNYESLLTAGTAFELLVSAHKDTITELNQDNENKRDSEVEVLSNPQNSHGSYLTKNQSEGEISSIKGPIGAQLTQEEEKVIGNVGWKPFWDYINYSKGTFMLCFIMLAQFAFMAFQTASTFWLAIAIEIPKVTNATLIEIYALISFASAAFVYVRSYLTALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVLCVALEILVIICIMVSVTWQVLIVAVPAMVASIYIQQYYQATARELIRINGTTKAPVMNFASETSLGVVTVRAFNMVDTFFKNYLTLVDTDASLFFHSNASMEWVVLRIEALQNLTVITASLLLILLPHGYVSPGLVGLSLSYAFTLTGAQIFWSRWFSNLSNYIISVERIKQFIHIPVEPPAIVDSNRPPSSWPSKGKIDLQGLEIKYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKAIEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKLMEYDEPSKLMETNSSFSKLVAEYWSSCRKNSFPNISRQQ 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03615 1467 Pfam ABC transporter transmembrane region 901 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g03615 1467 Pfam ABC transporter transmembrane region 291 541 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g03615 1467 FunFam ABC transporter C family member 3 1199 1450 - -
Vivi4g03615 1467 Gene3D - 1199 1450 IPR027417 -
Vivi4g03615 1467 FunFam Multidrug resistance protein associated1 575 839 - -
Vivi4g03615 1467 SUPERFAMILY ABC transporter transmembrane region 269 576 IPR036640 GO:0005524|GO:0016020
Vivi4g03615 1467 ProSitePatterns ABC transporters family signature. 721 735 IPR017871 GO:0005524|GO:0016887
Vivi4g03615 1467 SMART AAA_5 623 796 IPR003593 GO:0016887
Vivi4g03615 1467 SMART AAA_5 1242 1427 IPR003593 GO:0016887
Vivi4g03615 1467 CDD ABCC_MRP_domain2 1214 1434 - -
Vivi4g03615 1467 Gene3D - 603 846 IPR027417 -
Vivi4g03615 1467 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 596 819 IPR003439 GO:0005524
Vivi4g03615 1467 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g03615 1467 SUPERFAMILY ABC transporter transmembrane region 887 1198 IPR036640 GO:0005524|GO:0016020
Vivi4g03615 1467 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g03615 1467 Pfam ABC transporter 1233 1381 IPR003439 GO:0005524
Vivi4g03615 1467 Pfam ABC transporter 614 748 IPR003439 GO:0005524
Vivi4g03615 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1206 1449 IPR027417 -
Vivi4g03615 1467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 816 IPR027417 -
Vivi4g03615 1467 CDD ABC_6TM_ABCC_D1 282 570 IPR044746 GO:0140359
Vivi4g03615 1467 Gene3D ABC transporter type 1, transmembrane domain 869 1196 IPR036640 GO:0005524|GO:0016020
Vivi4g03615 1467 Gene3D ABC transporter type 1, transmembrane domain 256 578 IPR036640 GO:0005524|GO:0016020
Vivi4g03615 1467 FunFam ABC transporter C family member 5 867 1197 - -
Vivi4g03615 1467 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1218 1450 IPR003439 GO:0005524
Vivi4g03615 1467 FunFam ABC transporter C family member 10 264 578 - -
Vivi4g03615 1467 CDD ABCC_MRP_domain1 596 796 - -
Vivi4g03615 1467 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 203 1452 - -
Vivi4g03615 1467 MobiDBLite consensus disorder prediction 829 859 - -
Vivi4g03615 1467 CDD ABC_6TM_ABCC_D2 898 1191 IPR044726 GO:0140359
Vivi4g03615 1467 MobiDBLite consensus disorder prediction 840 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03615 Vivi-Chr4 154419745 154426478 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03615 596 861 Calmodulin-binding Proteins AT2G36910 25.524 4.55e-19 92.4