Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03612 ATGATTGCACAGGACGAGCGTCTTCGATCAACTTCAGAGATTCTAAATAGTATGAAGATCATTAAGTTGCAATCATGGGAAGAAAAATTCAAGAACTTAGTCCAGTCACTACGCGATAAAGAGTTCGTATGGTTGTCTAAGGCACAGATCTTGAAAGCTTCTAGCTCATTTCTTTATTGGATGTCTCCTACTGTTATTTCTGCTGTTGTTTTTCTTGGATGTGCTGTTACCAAGAGTGCACCATTGAATGCTGAAACTATTTTCACAGTTCTTGCAACACTGAGGAACTTGGGAGAGCCTGTTAGAATGGTCCCAGAGGCTCTATCCATTATGATTCAAGTTAAGGTTTCCTTCGATCGTCTAAATAACTTTTTGCTCGATGAAGAACTAAACAATGATGATAGTGAAAGAAAATTCAAGGAATGTTCGATTAATGCCGTAGAAATACAAGATGGTAACTTCATTTGGGATCATGAATCTGTGTCTCCAACTTTAGCAGATGTGAATTTAGAAATCAAATGGAAACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATATCAGGAACTGTTAATGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATACAAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAACCAATGGATAAAACAAGATACGAGAAAGCAATTAAAGCATGTGCCTTAGATAAGGATATAAATGATTTTAGCCATGGTGATCTTACAGAAATTGGTCAGAGAGGAATTAACATGAGTGGAGGACAAAAACAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCTGTTGATGCACATACAGCTGCAATACTATTCAATGAATGTGTCATGACTGCTTTAAGAGAGAAAACTGTCATTCTAGTTACTCATCAAGTGGAGTTTCTCTCGGATGTTGATACTATCTTGGTAATGGAGGGAGGAAAAGTTATTCAATCAGGTAATTATGAGAGTCTCCTAACAGCAGGAACAGCCTTTGAACTACTTGTGAGTGCTCATAAAGACACAATTACTGAGTTGAATCAAGACAATGAAAATAAAAGAGATTCTGAAGTCGAAGTTTTGTCTAATCCTCAAAACTCTCATGGTTCTTATCTCACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCAATTGGTGCACAACTTACACAAGAGGAAGAAAAAGTGATCGGTAATGTTGGATGGAAGCCATTTTGGGATTATATAAATTATTCCAAAGGGACATTCATGTTGTGTTTCATCATGTTAGCTCAATTTGCTTTCATGGCTTTTCAAACTGCATCAACCTTTTGGCTTGCTATAGCCATTGAAATTCCAAAAGTTACTAATGCCACCTTGATTGAAATTTATGCATTAATTTCTTTTGCTAGTGCTGCTTTTGTATATGTAAGGTCTTACTTGACTGCACTTCTTGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACAAGAGCTTCATCAGATTTGAGTATATTGGACTTTGATATACCGTATTCCATCACCTTTGTATTATGTGTAGCACTTGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAATATACATTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCATCTGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACACATTTTTCAAAAACTACTTAACACTTGTAGACACAGATGCTTCGTTGTTCTTTCATTCCAATGCGTCAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCATCACTGCATCTTTGTTGCTTATTCTACTTCCTCATGGATATGTATCCCCAGGCCTTGTGGGACTATCTCTTTCTTATGCTTTTACCTTGACAGGAGCCCAAATATTTTGGAGTAGATGGTTTTCCAACTTATCAAACTATATTATATCTGTTGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCCTGCTATTGTGGATAGTAATAGACCGCCATCTTCGTGGCCTTCCAAGGGAAAGATTGATCTTCAAGGCTTGGAGATCAAATATCGTCCTAATGCTCCGTTAGTTCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTGATTAGTGCTCTGTTTCGCTTAGTTGAGCCATCAAGAGGTGATATTCTCATAGATGGGATGAACATTTGCTCAATTGGGTTGAAGGATTTGAGAATGAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTAGGCCTGTACTCAGATGATGATATCTGGAAGGCTATAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGTTACCAAGTCTCCTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGTTTAGGACAACGCCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTTGTCCTGGATGAAGCTACGGCCTCCATTGACTCTGCTACAGATGCCATTTTACAAAGAGTAATCAGACAAGAATTTGAAGAATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTTATGGTTTTATCATATGGGAAACTGATGGAATATGATGAGCCTTCAAAGCTAATGGAAACCAACTCTTCATTCTCTAAGCTGGTTGCTGAATATTGGTCCAGTTGCAGGAAGAATTCATTCCCAAATATTAGCAGACAACAATAA 3057 0.3801 MIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVQSLRDKEFVWLSKAQILKASSSFLYWMSPTVISAVVFLGCAVTKSAPLNAETIFTVLATLRNLGEPVRMVPEALSIMIQVKVSFDRLNNFLLDEELNNDDSERKFKECSINAVEIQDGNFIWDHESVSPTLADVNLEIKWKHKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGGTFAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMTALREKTVILVTHQVEFLSDVDTILVMEGGKVIQSGNYESLLTAGTAFELLVSAHKDTITELNQDNENKRDSEVEVLSNPQNSHGSYLTKNQSEGEISSIKGPIGAQLTQEEEKVIGNVGWKPFWDYINYSKGTFMLCFIMLAQFAFMAFQTASTFWLAIAIEIPKVTNATLIEIYALISFASAAFVYVRSYLTALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITFVLCVALEILVIICIMVSVTWQVLIVAVPAMVASIYIQQYYQATARELIRINGTTKAPVMNFASETSLGVVTVRAFNMVDTFFKNYLTLVDTDASLFFHSNASMEWVVLRIEALQNLTVITASLLLILLPHGYVSPGLVGLSLSYAFTLTGAQIFWSRWFSNLSNYIISVERIKQFIHIPVEPPAIVDSNRPPSSWPSKGKIDLQGLEIKYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGMNICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKAIEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKLMEYDEPSKLMETNSSFSKLVAEYWSSCRKNSFPNISRQQ 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03612 1018 Gene3D ABC transporter type 1, transmembrane domain 420 747 IPR036640 GO:0005524|GO:0016020
Vivi4g03612 1018 CDD ABC_6TM_ABCC_D2 449 742 IPR044726 GO:0140359
Vivi4g03612 1018 SUPERFAMILY ABC transporter transmembrane region 3 127 IPR036640 GO:0005524|GO:0016020
Vivi4g03612 1018 Gene3D ABC transporter type 1, transmembrane domain 1 136 IPR036640 GO:0005524|GO:0016020
Vivi4g03612 1018 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1003 - -
Vivi4g03612 1018 Pfam ABC transporter 784 932 IPR003439 GO:0005524
Vivi4g03612 1018 Pfam ABC transporter 165 299 IPR003439 GO:0005524
Vivi4g03612 1018 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 769 1001 IPR003439 GO:0005524
Vivi4g03612 1018 Gene3D - 154 397 IPR027417 -
Vivi4g03612 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 368 IPR027417 -
Vivi4g03612 1018 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 113 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g03612 1018 FunFam Multidrug resistance protein associated1 126 390 - -
Vivi4g03612 1018 FunFam ABC transporter C family member 5 418 748 - -
Vivi4g03612 1018 MobiDBLite consensus disorder prediction 391 410 - -
Vivi4g03612 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 757 1000 IPR027417 -
Vivi4g03612 1018 Pfam ABC transporter transmembrane region 452 717 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g03612 1018 Pfam ABC transporter transmembrane region 3 92 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g03612 1018 FunFam ABC transporter C family member 3 750 1001 - -
Vivi4g03612 1018 Gene3D - 750 1001 IPR027417 -
Vivi4g03612 1018 ProSitePatterns ABC transporters family signature. 272 286 IPR017871 GO:0005524|GO:0016887
Vivi4g03612 1018 CDD ABCC_MRP_domain2 765 985 - -
Vivi4g03612 1018 SMART AAA_5 174 347 IPR003593 GO:0016887
Vivi4g03612 1018 SMART AAA_5 793 978 IPR003593 GO:0016887
Vivi4g03612 1018 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 147 370 IPR003439 GO:0005524
Vivi4g03612 1018 CDD ABCC_MRP_domain1 147 347 - -
Vivi4g03612 1018 MobiDBLite consensus disorder prediction 380 410 - -
Vivi4g03612 1018 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 455 717 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi4g03612 1018 SUPERFAMILY ABC transporter transmembrane region 438 749 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03612 Vivi-Chr4 154408839 154413863 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03612 765 999 Calmodulin-binding Proteins AT2G36910 31.950 1.49e-30 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03612 - - vvo:131595584 1961.42