Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03598 ATGGCACTCACTTCACAGAACTCTCTACTATTCTCATCCACTACACTTCCAAAGCACTCTTCTTCATCTTCTCGACTCTTCTTTTCCAAACGTAACAACCTTTTCGGACTTCCTTTATCTTCCTCCAAGCCAACTCTTCGAATTGCTTCGAGGAACAATAGGTCAATCCAATGTTCAATTTCCGAAGCCACTGAGCCGAAAACCGAGGAGAAGAAGAAATTGACGCGAAGACCAGATATTAGAAATATCGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTCGTTGATGCCATGCTCAAACAAACTAAGGTGTTTCGTGATAATCAAACTGTACAAGAAAGGATAATGGACTCGAATGATTTGGAGCGGGAAAGAGGAATCACTATACTGAGTAAAAACACATCTGTTACATATAAAGATGCCAAGATTAATATCATTGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTAGAACGCATCTTGAATATGGTCGAAGGAATCCTTCTAGTGGTGGATTCTGTTGAAGGGCCAATGCCGCAAACAAGGTTTGTCTTAAAGAAGGCTTTAGAGTTTGGTCATGCGGTTGTTGTGGTTGTGAATAAAATAGATAGGAGTTCTGCTCGGCCTGATTTTGTTGTCAATTCTACATTTGAACTCTTCATTGAGCTAAATGCAACAGATGAACAGTGTGACTTTCAGGTAATATATGCAAGTGGTATTAAAGGGAAAGCAGGGCTGTCTCCTGAAGATCTGGCAGACGACCTTGGGCCATTGTTCGAATCCATCATGAGATGTATCCCTGGACCACGTATTGATAAAGATGGCTCACTCCAAATGCTTGTTACAAGTACCGAGTTCGAAGGACATAAAGGGCGTATAGCAATTGGGCGCTTGGAAGCTGGGGTTTTAGAAAAAGGAATGGAAGTCAAGGTTTGTACTTCAGAAGATTCATGTAGATATGGAAGAGTTAGCGAGCTTTTTGTGTACGAAAAATTCTTTAGGGTCCCTGCCGAAAGGGTGGAGGCTGGGGATATATGTGCAGTATGTGGAATTTCTGATATTCAGATTGGGGAGACAATTGCGGATAAATTGACTGGGAAGGCACTACCGTCCATCAAAGTGGAAGAACCGACAGTGAAAATGGCTTTCGCCATAAACACTTCACCTTTTGTCGGCCGTGAGGGAAAGTATGTTACCAGTAGGAATTTAAGGGACAGACTTTATCGTGAGCTTGAGCGAAATTTGGCTATGAAGGTTGAAGATGGTGAAACAGCTGATACATTCATTGTCAGCGGGCGTGGAACTTTGCATATCACCATACTCATTGAAAATATGCGAAGGGAAGGATTTGAGTTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGAATGACAAAGTATTGGAGCCGTATGAGATTGCAACTGTGGAGGTACCGGAAGTGTACATGGGAGCTGTTGTTGAACTTCTTGGCGGGAGAAGAGGGCAAATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGTCTGCTTGGATTGCGTAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAACACTATATTTGATAGCTACGGGCCTTGGGCTGGTGACATGAATACTCGGGATTTAGGCTCGCTGGTTGCTTTTGAGGGTGGAACAAGTACATCTTATGCAATCGCTAGTTCACAGGAGAGGGGGCATATGTTTATTGGTCCTGGAGCAGAAGTTTATAAAGGTCAAATTATTGGCATCCATCAACGCTCTGGGGACTTGTCCTTGAATGTTTGTAAGAAAAAAGCTGCTACGAATATCCGTTCCAACAAGGAACAATCAGTGATTCTTGATACTCCATTGGATTATAGTTTGGATGACTGCATTGAATACATTCAAGAAGATGAACTAGTAGAGGTCACCCCCAAAAGTATAAGAATGTGCAAGAATCCAAAACTTGCAAAGAAAGGAAAGTAG 2019 0.425 MALTSQNSLLFSSTTLPKHSSSSSRLFFSKRNNLFGLPLSSSKPTLRIASRNNRSIQCSISEATEPKTEEKKKLTRRPDIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQTVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRSSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPEDLADDLGPLFESIMRCIPGPRIDKDGSLQMLVTSTEFEGHKGRIAIGRLEAGVLEKGMEVKVCTSEDSCRYGRVSELFVYEKFFRVPAERVEAGDICAVCGISDIQIGETIADKLTGKALPSIKVEEPTVKMAFAINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGFEFMVGPPKVINKKVNDKVLEPYEIATVEVPEVYMGAVVELLGGRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDMNTRDLGSLVAFEGGTSTSYAIASSQERGHMFIGPGAEVYKGQIIGIHQRSGDLSLNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEVTPKSIRMCKNPKLAKKGK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03598 672 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 119 134 IPR031157 -
Vivi4g03598 672 NCBIfam translational GTPase TypA/BipA 80 668 IPR006298 GO:0003924|GO:0005525
Vivi4g03598 672 SUPERFAMILY EF-G C-terminal domain-like 378 462 IPR035647 -
Vivi4g03598 672 CDD TypA_BipA 79 272 IPR047041 -
Vivi4g03598 672 CDD BipA_III 380 458 IPR047043 -
Vivi4g03598 672 FunFam GTP-binding protein TypA 381 486 - -
Vivi4g03598 672 CDD BipA_TypA_II 280 373 IPR047042 -
Vivi4g03598 672 SUPERFAMILY EF-G C-terminal domain-like 473 587 IPR035647 -
Vivi4g03598 672 FunFam GTP-binding protein TypA 77 273 - -
Vivi4g03598 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 281 IPR027417 -
Vivi4g03598 672 Pfam Elongation factor Tu domain 2 294 363 IPR004161 GO:0005525
Vivi4g03598 672 Pfam Elongation factor Tu GTP binding domain 79 270 IPR000795 GO:0003924|GO:0005525
Vivi4g03598 672 Gene3D Elongation Factor G (Translational Gtpase), domain 3 381 664 - -
Vivi4g03598 672 Gene3D Translation factors 274 374 - -
Vivi4g03598 672 SMART EFG_C_a 470 559 IPR000640 -
Vivi4g03598 672 Pfam Elongation factor G C-terminus 471 555 IPR000640 -
Vivi4g03598 672 NCBIfam small GTP-binding protein domain 81 229 IPR005225 GO:0005525
Vivi4g03598 672 PRINTS GTP-binding elongation factor signature 126 134 IPR000795 GO:0003924|GO:0005525
Vivi4g03598 672 PRINTS GTP-binding elongation factor signature 146 156 IPR000795 GO:0003924|GO:0005525
Vivi4g03598 672 PRINTS GTP-binding elongation factor signature 82 95 IPR000795 GO:0003924|GO:0005525
Vivi4g03598 672 PRINTS GTP-binding elongation factor signature 198 207 IPR000795 GO:0003924|GO:0005525
Vivi4g03598 672 Gene3D - 78 273 IPR027417 -
Vivi4g03598 672 Gene3D bipa protein 558 637 IPR042116 -
Vivi4g03598 672 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 78 273 IPR000795 GO:0003924|GO:0005525
Vivi4g03598 672 SUPERFAMILY Translation proteins 226 369 IPR009000 -
Vivi4g03598 672 CDD BipA_TypA_C 473 552 IPR035651 -
Vivi4g03598 672 Gene3D - 464 557 - -
Vivi4g03598 672 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 76 248 - -
Vivi4g03598 672 FunFam GTP-binding protein TypA 464 557 - -
Vivi4g03598 672 FunFam GTP-binding protein TypA 558 644 - -
Vivi4g03598 672 FunFam GTP-binding protein TypA 274 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03598 Vivi-Chr4 154201867 154207754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03598 80 207 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 6.25e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03598 K06207 - gmx:100785222 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03598 4 154201867 154207754 Vivi4g03598 4 154201867 154207754 ECH