Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03554 ATGGATGTGGAGATGGAAAATTCAACATTGAGTGTTACTGGTGAATCATCTATACCTGGCTCTGATGTTCAAGAACAAAACCCTGTATCTTCTGCTCAACCAACTTTGCCCCAGCCAACTCAACCTGTTATTCCACCAGTTATTTCTCCTGTCGTGCCTCCTCTTGCTCCAATTCCTGTGGTTCCTTCCTCTCTTGTGCGGCCGCTGGCACCACTCCCAGTCCGGCCACCGGTTATTAAACCACCAGTGCCACAAAATGGCGACGTTGGGTCTAGTGATTCTGAGTCAGATGGTGATGATGGAGATACCAGAATAAATAAGGGTACTGGCGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGCGACAGGAGAAAGCGATGCAAGACCTCATGATGAGAAGACGCGCTGCTGCTCTTGCTGTTCCCACGAATGACATGGCAGTGAGGGCCCGTCTTCGACATCTTGGTGAGCCGATTACTCTCTTTGGCGAGAGGGAGATGGAGAGACGGGATAGGTTGCGGATGATTATGGCCAAGCTGGATGCCGATGGTCAGCTGGAGAAGCTAACGAAAGCTCTTGAGGATGAAGAGGCCGCAACTTCTGCTCCAAAAGATGAGGCTGAGGATGATCTGCAGTATCCTTTTTACACTGAAGGCTCAAAGTCTCTCCTCGATGCAAGGATTGATATTGCTAAATATTCTTTAGTAAGGGCTGCATTGCGTATTCAACGTGCCCAGAGAAGAAGAGATGATCCGGATGAAGATGTGGACGCGGAGATGGATTGGACATTGAAGCAGGCTGCAAATTTGAATCTTGAATTCAGTGAAATCGGAGATGATCGACCACTTACAGGTTGCTCGTTCTCCCGGGATGGAAAAGGGCTTGCTACTTGTTCTCTAACTGGGGCTTCCAAGTTGTGGAGCATGCCTAATGTAAAAAAAGTTTCTACCTTCAAGGGGCACACCGAGCGTGCTACTGATGTTGCTTATTCTCCTGTGCACAATCATTTAGCTACTGCCTCTGCCGACCGGACAGCAAAGTATTGGAATGATCAAGGATCTCTTTTGAGAACATTTGAGGGTCATCTTGATCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAATACTTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATTGAAACAGGAGAGGAGCTTCTTCTACAAGAAGGCCATAGTAGAAGTGTATATAATTTAGCTTTTCATCATGATGGATCGTTAGCCGCGTCTTGTGGACTGGATGCTCTTGCTCGTGTATGGGACCTTCGAACTGGAAGAAGTGTTCTTGCACTAGAAGGTCATGTCAAACCGGTTCTTGGCGTCAGTTTTTCTCCTAATGGATATCATTTAGCCACTGGTGGTGAAGATAACACTTGTCGCATTTGGGATTTAAGGAAGAAGAAATCCTTGTACACCATTCCTGCTCACTCTAATTTAATATCGCAAGTAAAATTCGAGCCACAAGAGGGTTACTTTTTGGTAACTGCATCGTATGACATGACAGCTAAGGTTTGGTCGGGCCGGGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCAAAAGTTACTTCTCTGGATGTCCTTGGAGATGGTGGGTATATAGTTACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCTAGCGGCACTACTAGTGAGCAAGCTATGGATGTTGACTAA 1725 0.4678 MDVEMENSTLSVTGESSIPGSDVQEQNPVSSAQPTLPQPTQPVIPPVISPVVPPLAPIPVVPSSLVRPLAPLPVRPPVIKPPVPQNGDVGSSDSESDGDDGDTRINKGTGEYEISEESRLVRERQEKAMQDLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLTKALEDEEAATSAPKDEAEDDLQYPFYTEGSKSLLDARIDIAKYSLVRAALRIQRAQRRRDDPDEDVDAEMDWTLKQAANLNLEFSEIGDDRPLTGCSFSRDGKGLATCSLTGASKLWSMPNVKKVSTFKGHTERATDVAYSPVHNHLATASADRTAKYWNDQGSLLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYNLAFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKPVLGVSFSPNGYHLATGGEDNTCRIWDLRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSGTTSEQAMDVD 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 562 - -
Vivi4g03554 574 ProSitePatterns Trp-Asp (WD) repeats signature. 380 394 IPR019775 -
Vivi4g03554 574 Pfam WD domain, G-beta repeat 442 477 IPR001680 GO:0005515
Vivi4g03554 574 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Vivi4g03554 574 Pfam WD domain, G-beta repeat 355 393 IPR001680 GO:0005515
Vivi4g03554 574 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Vivi4g03554 574 Pfam WD domain, G-beta repeat 525 562 IPR001680 GO:0005515
Vivi4g03554 574 Pfam WD domain, G-beta repeat 483 520 IPR001680 GO:0005515
Vivi4g03554 574 PANTHER WD40 REPEAT PROTEIN 93 562 - -
Vivi4g03554 574 MobiDBLite consensus disorder prediction 75 119 - -
Vivi4g03554 574 MobiDBLite consensus disorder prediction 38 52 - -
Vivi4g03554 574 SUPERFAMILY WD40 repeat-like 272 561 IPR036322 GO:0005515
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 520 - -
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 529 IPR001680 GO:0005515
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 486 IPR001680 GO:0005515
Vivi4g03554 574 Gene3D - 121 190 IPR036285 -
Vivi4g03554 574 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Vivi4g03554 574 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Vivi4g03554 574 PRINTS G protein beta WD-40 repeat signature 464 478 IPR020472 -
Vivi4g03554 574 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 488 564 - -
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 440 - -
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 352 IPR001680 GO:0005515
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 402 IPR001680 GO:0005515
Vivi4g03554 574 Coils Coil 181 201 - -
Vivi4g03554 574 MobiDBLite consensus disorder prediction 97 119 - -
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 445 479 - -
Vivi4g03554 574 MobiDBLite consensus disorder prediction 1 37 - -
Vivi4g03554 574 MobiDBLite consensus disorder prediction 1 52 - -
Vivi4g03554 574 SUPERFAMILY PRP4-like 128 183 IPR036285 -
Vivi4g03554 574 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 260 444 - -
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 571 IPR001680 GO:0005515
Vivi4g03554 574 SMART pr04_2 145 198 IPR014906 -
Vivi4g03554 574 CDD WD40 284 562 - -
Vivi4g03554 574 Pfam pre-mRNA processing factor 4 (PRP4) like 150 176 IPR014906 -
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 352 - -
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 444 IPR001680 GO:0005515
Vivi4g03554 574 ProSitePatterns Trp-Asp (WD) repeats signature. 464 478 IPR019775 -
Vivi4g03554 574 Gene3D - 262 446 IPR015943 GO:0005515
Vivi4g03554 574 SMART WD40_4 313 352 IPR001680 GO:0005515
Vivi4g03554 574 SMART WD40_4 480 520 IPR001680 GO:0005515
Vivi4g03554 574 SMART WD40_4 396 435 IPR001680 GO:0005515
Vivi4g03554 574 SMART WD40_4 438 477 IPR001680 GO:0005515
Vivi4g03554 574 SMART WD40_4 523 562 IPR001680 GO:0005515
Vivi4g03554 574 SMART WD40_4 354 393 IPR001680 GO:0005515
Vivi4g03554 574 SMART WD40_4 271 310 IPR001680 GO:0005515
Vivi4g03554 574 ProSitePatterns Trp-Asp (WD) repeats signature. 422 436 IPR019775 -
Vivi4g03554 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 398 - -
Vivi4g03554 574 Gene3D - 447 572 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03554 Vivi-Chr4 153842152 153846089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03554 365 561 U-box Gene Family AT2G33340 23.077 3.34e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03554 K12662 - gmx:100788948 867.07