Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03530 ATGAGGAGGAACTGCAACTTAGAACTCTGCCTTTTTCCTCAATATGTATCTGATAACAATCACAATCACAACAATCACATGGTTGAAGAAGAAAGAGATAGTGATCAAAGTTCAATCCAAAATCAGCAACTGCCACTGACTATTTTCTACGATGGCAAGATGTGTGTTACTGATGTCACTGAGTTTCAGGCCAAATCAATCTTAATGATGGCAAATAAAAAAATGCAAGAAACTGTAATGACACCATCAGGGTCAGAGGCATCAACACCAACAATTATACAATCTCCACATCAATTGTATAGCCCTGGACCTGCTCCTGCTCTTTCAATGAGACATTCTTTGCAGCGGTTTCTACAAAAGAGAAAAAATAGAGTTCAACAAGCTTCTCCATACAATCATTAG 402 0.3806 MRRNCNLELCLFPQYVSDNNHNHNNHMVEEERDSDQSSIQNQQLPLTIFYDGKMCVTDVTEFQAKSILMMANKKMQETVMTPSGSEASTPTIIQSPHQLYSPGPAPALSMRHSLQRFLQKRKNRVQQASPYNH 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03530 133 ProSiteProfiles Tify domain profile. 39 73 IPR010399 -
Vivi4g03530 133 Pfam tify domain 43 72 IPR010399 -
Vivi4g03530 133 MobiDBLite consensus disorder prediction 21 40 - -
Vivi4g03530 133 MobiDBLite consensus disorder prediction 79 98 - -
Vivi4g03530 133 SMART tify_2 37 73 IPR010399 -
Vivi4g03530 133 Pfam Jas motif 111 131 IPR018467 -
Vivi4g03530 133 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 29 132 IPR040390 -
Vivi4g03530 133 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03530 Vivi-Chr4 153410017 153411037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03530 1 131 Tify Gene Family AT1G30135 40.602 7.91e-21 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g03530 tify 7.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03530 - - vvo:131641562 188.348