Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03529 ATGAGGAGGAATTGCAACTTAGAACTCTGCCTTTTTCCTCAATACGTTTCTGATAGCACTCACAATCAAAACAATCACATGTTTGAAGAAGAAAAAGATAGTGATAAGAGTTCAATGCAAAATCAGCAACAGCCGCTGACTATTTTCTACGATGGCAAGATGAGTGTTATTGATGTCACAGAGTTTCAGGCCAAATCAATCTTAATGATGGCAAATAGAAAAGTGCAAGAAACAGTAATGACACTAGAGTCAAAGGCATCAATACCAACAATTGTACAATCTCCACATCAATTGTATAGCCCTGGACCTGGTCCTGCTCTTTCAATGAGATCTTCTTTGCAACGGTTTCTACAAAAGAGAAAAAATAGGATTCAACAAGCTTCTCCATACAATCATTAG 399 0.3734 MRRNCNLELCLFPQYVSDSTHNQNNHMFEEEKDSDKSSMQNQQQPLTIFYDGKMSVIDVTEFQAKSILMMANRKVQETVMTLESKASIPTIVQSPHQLYSPGPGPALSMRSSLQRFLQKRKNRIQQASPYNH 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03529 132 Pfam tify domain 42 72 IPR010399 -
Vivi4g03529 132 SMART tify_2 39 73 IPR010399 -
Vivi4g03529 132 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 27 131 IPR040390 -
Vivi4g03529 132 ProSiteProfiles Tify domain profile. 39 73 IPR010399 -
Vivi4g03529 132 Pfam Jas motif 110 130 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03529 Vivi-Chr4 153398777 153399373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03529 1 130 Tify Gene Family AT1G30135 40.152 1.07e-18 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g03529 tify 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03529 - - vvo:131641562 182.185