Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03527 ATGAAGAGGAATTGCAACTTGGAACTCCGCCTTTATTCTCCATACGTTTCTCATAGAAATCACATGGTTGAAGAAGAAAAAGATAGTGATAAGAGTTCAATGCAAAATCAGCAACAGCCACTGACCATTTTCTATGATGGCAAGATGTGTGTTATTGATGTCACTGAGTTTCAGGCCAAATCCATCTTAATGTTGGCAAATGAAAAAGTGGAAGAAATAGTGAAGACACCAACATGGTCAGAGGCATCGACACCAACAACAGTAGAATCTCCTCATCAATTGTATAGCCCTGGTCATGCTCTTTCAATGAAAATGTCTTTGCAACGGTTTCTACAAAAGAGAAAAATTAGGATCCAACAAGCTTCTCCATATAATCATTAG 381 0.3806 MKRNCNLELRLYSPYVSHRNHMVEEEKDSDKSSMQNQQQPLTIFYDGKMCVIDVTEFQAKSILMLANEKVEEIVKTPTWSEASTPTTVESPHQLYSPGHALSMKMSLQRFLQKRKIRIQQASPYNH 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03527 126 Pfam Jas motif 104 124 IPR018467 -
Vivi4g03527 126 Pfam tify domain 37 67 IPR010399 -
Vivi4g03527 126 ProSiteProfiles Tify domain profile. 34 68 IPR010399 -
Vivi4g03527 126 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 30 125 IPR040390 -
Vivi4g03527 126 SMART tify_2 34 68 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03527 Vivi-Chr4 153263800 153264979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03527 1 124 Tify Gene Family AT1G30135 43.411 2.06e-21 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g03527 tify 9.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03527 - - vvo:131641562 213.001