Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03479 ATGTATGAAATGCTGGTGGGATATCCGCCTTTTTATTCCGGACATTCGACAATCGCTGTAGGAAGTGGAGGAGATGGAGGAGGCGGTGACAGTGGTGCTGGTGAACAAAAAATGAAGCATTTCATACATTGTGAGGCTTCTGATTCATTGGAAAAATCAGTTCGGGATACTACTGGAAGAAAGCATGATGATTCGAAAGGCATGTCGTCGTTTTCTGGATCGTCGAAAAGATCGCGGGTGCAGAATCGATTACAAAATATGATTTTCTCTGTTGATGGATGCAACACGGATCTTAGTGATTGTAGAGAGTATCATAAGCAACATAGAGTTTGCGAAAAACATTAG 345 0.4203 MYEMLVGYPPFYSGHSTIAVGSGGDGGGGDSGAGEQKMKHFIHCEASDSLEKSVRDTTGRKHDDSKGMSSFSGSSKRSRVQNRLQNMIFSVDGCNTDLSDCREYHKQHRVCEKH 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03479 114 ProSiteProfiles Zinc finger SBP-type profile. 86 114 IPR004333 GO:0003677
Vivi4g03479 114 SUPERFAMILY SBT domain 90 114 IPR036893 GO:0003677|GO:0005634
Vivi4g03479 114 MobiDBLite consensus disorder prediction 50 79 - -
Vivi4g03479 114 Gene3D - 79 114 IPR036893 GO:0003677|GO:0005634
Vivi4g03479 114 MobiDBLite consensus disorder prediction 50 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03479 Vivi-Chr4 151945367 151946758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03479 63 114 SBP-box Gene Family AT1G69170 47.170 6.26e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi4g03479 SBP 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03479 - - vvo:131598087 215.698