Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03462 ATGGGTTGTGTGTTTGGTAAAGAGTCATTGGTGGAGGAGAGGAGAGAGGAAGTGAGAGAAGAGAAGGTTGATGTGGGTGGTGGTGGTGGAGAGGTTGAGAATGTGAAGGAGGGTGGAGAGGAGAAGAGAGTGAGACATGGTGGGGAGAGAAGAAGGCGATCTTCGAAGGCGAATCCGAGGTTGAGTAATCCTTCTAACAATGTTCATGGTGAACAGGTTGCTGCTGGTTGGCCTTCTTGGCTTTCTAAGGTTGCTGGTGAAGCTATCAATGGTTTGGTTCCTAGGAGGGCTGATACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACATATAGCAATGTTTACAAGGCTAGGGATACTTTAACAGGGAAGATTGTTGCTCTAAAGAAGGTTCGTTTCGATAATTTAGAGCCCGAGAGTGTGAAGTTTATGGCTAGAGAGATTCTGATTCTGCGTCGGTTGGATCATCCCAATGTTGTTAAACTTGAAGGCTTGGTGACTTCTAGAATGTCGTGTAGTTTATATCTTGTGTTTGAATATATGGCTCATGATTTGGCTGGACTCGCTACAAACCCTGCGATTAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAACTATTTTCTGGGCTGGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGTTCAAATCTTCTTATTGACAACGATGGAATTCTCAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCGATGACAAGTAGAGTGGTGACTTTATGGTATCGGCCTCCTGAGCTCCTTCTTGGAGCCACTGAGTATGGCGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCAGAATTGTTGGCTGGGAAACCTATCATGCCTGGTCGAACCGAGGTGGAGCAACTGCATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGTCAAAGCTTCCACATGCTACTATTTTTAAACCACAACAATCATACAAGCGATGCATAGTCGAGACTTTTAAGAATTTTCCACCGTCATCCCTGCCACTGATCGAGACCCTTCTCGCAATTGATCCAGATGAACGGCTAACCGCCACTGCTGCATTGCATAGTGAATTCTTTATTACAAAGCCTTATGCCTGTGATCCATCTAGCCTTCCTAAATATCCTCCCAGCAAGGAGATGGATGCGAAACTACGCGACGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGATCGAATGCTGATGGTGTCAAGAAATCCCGCCCACGTGAGCGAGTAGGGAGAGGACTTCCCGGTCCCGACGCCAATGCCGAACTGCAAGCAAACATCGATAGACGGCGATTGATCACGCACGCCAATGCTAAAAGCAAGAGTGAAAAATTTCCACCTCCACACCAAGACGGAGCTCTAGGTTATCCTCTCGGCTCTTCTCAACACATGGATCCCATGTTCGATCCACCGGACGTTCCATTCAGTTCCACAAACTTGTCACTACCAAAAACAAACATCCATACATGGTCCGGCCCATTGATAGACCCTGGCAGCGTCGGTGCACCGAGGCGAAAGAAGAAACATGGCAGGGCCACACTTTCAGAAGCTCATCACATAATGGAGATTCTTGACTTATATGCTAAGGCGGCTGGTCAAGAGATTAATATGTCAAAGTCAGAAGTTTTCTTTAGTCGCAATCTGAGTGTCCCAGCACAGGAGGACCTGGCAAAGGTTATGGGGGTCCGTCATGTTCTTGGGACTGGTATTTACTTGGGGCTTCCGTCTCTGATAGGTCGCAGTAAGAAGGCTACATTTTCTTTTGTCAAGGACCGTATATGGAAGCGTATTAATTCGTGGAGGGGTCGGTATTTATCAAGGGCAGGTAAAGAGACTATGATCAAGTCTGTTCTTCAGGCTATCCCGGCTTATATTATGAGTATTTTTCTTCTCCCGGATGGTGTGGTTGATGATATTGAGAAAATGATTAACTCTTTCTGGTGGGGAGGTGGTTCTAATGGAAAGGGGATTCGTTGGATGTCATGGGATAAGTTGACAGTCTCGAAGGAGGAGGGTGGTTTGGGTTTCAGGGATTTTAGAGCTTTTAATATGGCTATGGTAGCAAAACAGGGTTGGTTTATCATGTCTAATCCTCAAGCTCTTGTGTCCAGAGTCTTCAAAGCAAGGTATTTTCCGAGAACTACTTTCTTTGATGCAACTCTTGGTTATAACCCCAGTTTTGTTTGGCGTGGTATTTGGAAGGCGAGGGAGGTTCTAATGTTGGGTTGCAGGTGGAGTATTGGAGAGGGGAGCAAGATAAAAGTCATGCAGGAACCTTGGCTCCGTGGTACGAATGAGGGTTGTTTGTCTGGTCCTCAAGTGCAAGTTACAAAAGATATCCTTCAAGTACCCTTAGTAGAGGATGTTATGGAGGACAGATTAGTTTGGAAGGAAGAACAACATGGCATGTATAGCGTTAGGTCGGGATATCGTGTTTGGAGGAAGGTGAGGAAAAGGTATGATGGGGGGTCCGTAAAGGGTAACTGGAATAGCCTATGGAAGATAGCGGCACCGGCTAGAGTTAAACATCTCCTTTGGAGGATTTGTACGGAGTGTCTTCCGACGAGAGTGCGACTACGGCAACATCATGTTCCATGTGCTACTAATTGTCCGTCTTGTGATAACGGGTATGAAGATGACTGGCATGTCTTTTTTGGTTGCTTAGAGGCAATTTCTTCCTGGCGGGCAGCAGGTTTGTATGATGTTATATTTCACCGTCTCCATTCTTTCCAAGATGTTAAATCTGTTATTTTTGATATTTGCTGCAAAGAAGATAATAAACTTGCTGGTAGAGTAGCGGTAATGATAGAGAATTTATGGAAGAATAGAAATGATTGGGTTTGGAATAATGAGAAAGAAGAAGCTACTAAACTAGGATGGTTAGCTTTGCATAAGTGGCAAGAATGGTTTTCTGCTCAACAATTTCGGCACTCTGAACAAGTTGAGGAGAATCTCTTACAATGGCATCCGCCGTCGAGTGGCTCCTTTAAATGTAATGTGGATGCAGGTTTTAACCGTCGTTTAGGTACAACAAACCGTGGATGGTGTATTCGTGATGATCATGGTGATTTTGTTGTAGCGGGAGCGGCTTGGGATGGTGGTACTTTATCTACTTTAGAAGCGGAAGCTTTAGCCCTCAAGGAAGCTATCCATGGTGTTAGTACCCTTCACCTTGGCCATGTTTTATTCGAAAGTGACTCTCAGGTGGTTGTTAAAAGCTTAAGATCAACCGCTTGTGGCAATTCTGAGTTTAATTGTATTATCTCCGCTATTAAGTTGTTACTATTAGATTTTCCCCACTTTGAGGTGAAGTTTGTAAAGCGTCAAGCGAATATGGTTGCTCACACTTTAGCTAAGGCGGCCAATTCCTGGACTCGACGCATGTTATTTGATGAAATTCCTCCTTGTATTTTATCTATTTTGAATAATGAAAGAAGTTAA 3522 0.4446 MGCVFGKESLVEERREEVREEKVDVGGGGGEVENVKEGGEEKRVRHGGERRRRSSKANPRLSNPSNNVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIVETFKNFPPSSLPLIETLLAIDPDERLTATAALHSEFFITKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKSRPRERVGRGLPGPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPMFDPPDVPFSSTNLSLPKTNIHTWSGPLIDPGSVGAPRRKKKHGRATLSEAHHIMEILDLYAKAAGQEINMSKSEVFFSRNLSVPAQEDLAKVMGVRHVLGTGIYLGLPSLIGRSKKATFSFVKDRIWKRINSWRGRYLSRAGKETMIKSVLQAIPAYIMSIFLLPDGVVDDIEKMINSFWWGGGSNGKGIRWMSWDKLTVSKEEGGLGFRDFRAFNMAMVAKQGWFIMSNPQALVSRVFKARYFPRTTFFDATLGYNPSFVWRGIWKAREVLMLGCRWSIGEGSKIKVMQEPWLRGTNEGCLSGPQVQVTKDILQVPLVEDVMEDRLVWKEEQHGMYSVRSGYRVWRKVRKRYDGGSVKGNWNSLWKIAAPARVKHLLWRICTECLPTRVRLRQHHVPCATNCPSCDNGYEDDWHVFFGCLEAISSWRAAGLYDVIFHRLHSFQDVKSVIFDICCKEDNKLAGRVAVMIENLWKNRNDWVWNNEKEEATKLGWLALHKWQEWFSAQQFRHSEQVEENLLQWHPPSSGSFKCNVDAGFNRRLGTTNRGWCIRDDHGDFVVAGAAWDGGTLSTLEAEALALKEAIHGVSTLHLGHVLFESDSQVVVKSLRSTACGNSEFNCIISAIKLLLLDFPHFEVKFVKRQANMVAHTLAKAANSWTRRMLFDEIPPCILSILNNERS 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03462 1173 Pfam Protein kinase domain 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03462 1173 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 538 1146 - -
Vivi4g03462 1173 SMART serkin_6 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03462 1173 Pfam Reverse transcriptase-like 1026 1148 IPR002156 GO:0003676|GO:0004523
Vivi4g03462 1173 SUPERFAMILY Ribonuclease H-like 1024 1146 IPR012337 -
Vivi4g03462 1173 MobiDBLite consensus disorder prediction 418 439 - -
Vivi4g03462 1173 SUPERFAMILY Protein kinase-like (PK-like) 95 390 IPR011009 -
Vivi4g03462 1173 CDD STKc_CDK9_like 100 384 - -
Vivi4g03462 1173 Gene3D Transferase(Phosphotransferase) domain 1 183 423 - -
Vivi4g03462 1173 MobiDBLite consensus disorder prediction 15 69 - -
Vivi4g03462 1173 MobiDBLite consensus disorder prediction 418 447 - -
Vivi4g03462 1173 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Vivi4g03462 1173 FunFam probable serine/threonine-protein kinase At1g54610 183 424 - -
Vivi4g03462 1173 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Vivi4g03462 1173 FunFam probable serine/threonine-protein kinase At1g54610 87 182 - -
Vivi4g03462 1173 Gene3D Phosphorylase Kinase; domain 1 88 182 - -
Vivi4g03462 1173 Gene3D - 1022 1152 IPR036397 GO:0003676
Vivi4g03462 1173 ProSiteProfiles Protein kinase domain profile. 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03462 1173 CDD RNase_H_like 1025 1146 IPR044730 -
Vivi4g03462 1173 Pfam zinc-binding in reverse transcriptase 831 921 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03462 Vivi-Chr4 151667873 151673568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03462 95 422 Core Cell Cycle Gene Families AT5G10270 52.035 1.14e-110 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi4g03462 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03462 K08819 - vvo:131595530 2294.62