Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03461 ATGGGTTGTGTGTTTGGTAAAGAGTCATTGGTGGAGGAGAGGAGAGAGGAAGTGAGAGAAGAGAAGGTTGATGTGGGTGGTGGTGGTGGAGAGGTTGAGAATGTGAAGGAGGGTGGAGAGGAGAAGAGAGTGAGACATGGTGGGGAGAGAAGAAGGCGATCTTCGAAGGCGAATCCGAGGTTGAGTAATCCTTCTAACAATGTTCATGGTGAACAGGTTGCTGCTGGTTGGCCTTCTTGGCTTTCTAAGGTTGCTGGTGAAGCTATCAATGGTTTGGTTCCTAGGAGGGCTGATACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACATATAGCAATGTTTACAAGGCTAGGGATACTTTAACAGGGAAGATTGTTGCTCTAAAGAAGGTTCGTTTCGATAATTTAGAGCCCGAGAGTGTGAAGTTTATGGCTAGAGAGATTCTGATTCTGCGTCGGTTGGATCATCCCAATGTTGTTAAACTTGAAGGCTTGGTGACTTCTAGAATGTCGTGTAGTTTATATCTTGTGTTTGAATATATGGCTCATGATTTGGCTGGACTCGCTACAAACCCTGCGATTAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAACTATTTTCTGGGCTGGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGTTCAAATCTTCTTATTGACAACGATGGAATTCTCAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCGATGACAAGTAGAGTGGTGACTTTATGGTATCGGCCTCCTGAGCTCCTTCTTGGAGCCACTGAGTATGGCGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCAGAATTGTTGGCTGGGAAACCTATCATGCCTGGTCGAACCGAGGTGGAGCAACTGCATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGTCAAAGCTTCCACATGCTACTATTTTTAAACCACAACAATCATACAAGCGATGCATAGTCGAGACTTTTAAGAATTTTCCACCGTCATCCCTGCCACTGATCGAGACCCTTCTCGCAATTGATCCAGATGAACGGCTAACCGCCACTGCTGCATTGCATAGTGAATTCTTTATTACAAAGCCTTATGCCTGTGATCCATCTAGCCTTCCTAAATATCCTCCCAGCAAGGAGATGGATGCGAAACTACGCGACGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGATCGAATGCTGATGGTGTCAAGAAATCCCGCCCACGTGAGCGAGTAGGGAGAGGACTTCCCGGTCCCGACGCCAATGCCGAACTGCAAGCAAACATCGATAGACGGCGATTGATCACGCACGCCAATGCTAAAAGCAAGAGTGAAAAATTTCCACCTCCACACCAAGACGGAGCTCTAGGTTATCCTCTCGGCTCTTCTCAACACATGGATCCCATGTTCGATCCACCGGACGTTCCATTCAGTTCCACAAACTTGTCACTACCAAAAACAAACATCCATACATGGTCCGGCCCATTGATAGACCCTGGCAGCGTCGGTGCACCGAGGCGAAAGAAGAAACATGGCAGGGCCACACTTTCAGAAGCTCATCACATAATGGAGATTCTTGACTTATATGCTAAGGCGGCTGGTCAAGAGATTAATATGTCAAAGTCAGAAGTTTTCTTTAGTCGCAATCTGAGTGTCCCAGCACAGGAGGACCTGGCAAAGGTTATGGGGGTCCGTCATGTTCTTGGGACTGGTATTTACTTGGGGCTTCCGTCTCTGATAGGTCGCAGTAAGAAGGCTACATTTTCTTTTGTCAAGGACCGTATATGGAAGCGTATTAATTCGTGGAGGGGTCGGTATTTATCAAGGGCAGGTAAAGAGACTATGATCAAGTCTGTTCTTCAGGCTATCCCGGCTTATATTATGAGTATTTTTCTTCTCCCGGATGGTGTGGTTGATGATATTGAGAAAATGATTAACTCTTTCTGGTGGGGAGGTGGTTCTAATGGAAAGGGGATTCGTTGGATGTCATGGGATAAGTTGACAGTCTCGAAGGAGGAGGGTGGTTTGGGTTTCAGGGATTTTAGAGCTTTTAATATGGCTATGGTAGCAAAACAGGGTTGGTTTATCATGTCTAATCCTCAAGCTCTTGTGTCCAGAGTCTTCAAAGCAAGGTGGAGTATTGGAGAGGGGAGCAAGATAAAAGTCATGCAGGAACCTTGGCTCCGTGGTACGAATGAGGGTTGTTTGTCTGGTCCTCAAGTGCAAGGTGCGTATAATATTACCGTTAAGGATTTGTTGCTGCCTAATGTTAAACAATGGAATATGCGGGTTATTCGTACTTTATTTGATGTTACAGTTACAAAAGATATCCTTCAAGTACCCTTAGTAGAGGATGTTATGGAGGACAGATTAGTTTGGAAGGAAGAACAACATGGCATGTATAGCGTTAGGTCGGGATATCGTGTTTGGAGGAAGGTGAGGAAAAGGTATGATGGGGGGTCCGTAAAGGGTAACTGGAATAGCCTATGGAAGATAGCGGCACCGGCTAGAGTTAAACATCTCCTTTGGAGGATTTGTACGGAGTGTCTTCCGACGAGAGTGCGACTACGGCAACATCATGTTCCATGTGCTACTAATTGTCCGTCTTGTGATAACGGGTATGAAGATGACTGGCATGTCTTTTTTGGTTGCTTAGAGGCAATTTCTTCCTGGCGGGCAGCAGGTTTGTATGATGTTATATTTCACCGTCTCCATTCTTTCCAAGATGTTAAATCTGTTATTTTTGATATTTGCTGCAAAGAAGATAATAAACTTGCTGGTAGAGTAGCGGTAATGATAGAGAATTTATGGAAGAATAGAAATGATTGGGTTTGGAATAATGAGAAAGAAGAAGCTACTAAACTAGGATGGTTAGCTTTGCATAAGTGGCAAGAATGGTTTTCTGCTCAACAATTTCGGCACTCTGAACAAGTTGAGGAGAATCTCTTACAATGGCATCCGCCGTCGAGTGGCTCCTTTAAATGTAATGTGGATGCAGGTTTTAACCGTCGTTTAGGTACAACAAACCGTGGATGGTGTATTCGTGATGATCATGGTGATTTTGTTGTAGCGGGAGCGGCTTGGGATGGTGGTACTTTATCTACTTTAGAAGCGGAAGCTTTAGCCCTCAAGGAAGCTATCCATGGTGTTAGTACCCTTCACCTTGGCCATGTTTTATTCGAAAGTGACTCTCAGGTGGTTGTTAAAAGCTTAAGATCAACCGCTTGTGGCAATTCTGAGTTTAATTGTATTATCTCCGCTATTAAGTTGTTACTATTAGATTTTCCCCACTTTGAGGTGAAGTTTGTAAAGCGTCAAGCGAATATGGTTGCTCACACTTTAGCTAAGGCGGCCAATTCCTGGACTCGACGCATGTTATTTGATGAAATTCCTCCTTGTATTTTATCTATTTTGAATAATGAAAGAAGTTAA 3507 0.4423 MGCVFGKESLVEERREEVREEKVDVGGGGGEVENVKEGGEEKRVRHGGERRRRSSKANPRLSNPSNNVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIVETFKNFPPSSLPLIETLLAIDPDERLTATAALHSEFFITKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKSRPRERVGRGLPGPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPMFDPPDVPFSSTNLSLPKTNIHTWSGPLIDPGSVGAPRRKKKHGRATLSEAHHIMEILDLYAKAAGQEINMSKSEVFFSRNLSVPAQEDLAKVMGVRHVLGTGIYLGLPSLIGRSKKATFSFVKDRIWKRINSWRGRYLSRAGKETMIKSVLQAIPAYIMSIFLLPDGVVDDIEKMINSFWWGGGSNGKGIRWMSWDKLTVSKEEGGLGFRDFRAFNMAMVAKQGWFIMSNPQALVSRVFKARWSIGEGSKIKVMQEPWLRGTNEGCLSGPQVQGAYNITVKDLLLPNVKQWNMRVIRTLFDVTVTKDILQVPLVEDVMEDRLVWKEEQHGMYSVRSGYRVWRKVRKRYDGGSVKGNWNSLWKIAAPARVKHLLWRICTECLPTRVRLRQHHVPCATNCPSCDNGYEDDWHVFFGCLEAISSWRAAGLYDVIFHRLHSFQDVKSVIFDICCKEDNKLAGRVAVMIENLWKNRNDWVWNNEKEEATKLGWLALHKWQEWFSAQQFRHSEQVEENLLQWHPPSSGSFKCNVDAGFNRRLGTTNRGWCIRDDHGDFVVAGAAWDGGTLSTLEAEALALKEAIHGVSTLHLGHVLFESDSQVVVKSLRSTACGNSEFNCIISAIKLLLLDFPHFEVKFVKRQANMVAHTLAKAANSWTRRMLFDEIPPCILSILNNERS 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03461 1168 PANTHER CELL DIVISION PROTEIN KINASE 98 390 - -
Vivi4g03461 1168 Pfam Protein kinase domain 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03461 1168 SMART serkin_6 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03461 1168 MobiDBLite consensus disorder prediction 418 439 - -
Vivi4g03461 1168 CDD STKc_CDK9_like 100 384 - -
Vivi4g03461 1168 MobiDBLite consensus disorder prediction 15 69 - -
Vivi4g03461 1168 Gene3D - 1017 1147 IPR036397 GO:0003676
Vivi4g03461 1168 MobiDBLite consensus disorder prediction 418 447 - -
Vivi4g03461 1168 CDD RNase_H_like 1020 1141 IPR044730 -
Vivi4g03461 1168 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Vivi4g03461 1168 FunFam probable serine/threonine-protein kinase At1g54610 183 424 - -
Vivi4g03461 1168 Pfam zinc-binding in reverse transcriptase 826 916 IPR026960 -
Vivi4g03461 1168 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Vivi4g03461 1168 Gene3D Transferase(Phosphotransferase) domain 1 183 423 - -
Vivi4g03461 1168 FunFam probable serine/threonine-protein kinase At1g54610 87 182 - -
Vivi4g03461 1168 SUPERFAMILY Protein kinase-like (PK-like) 95 390 IPR011009 -
Vivi4g03461 1168 Gene3D Phosphorylase Kinase; domain 1 88 182 - -
Vivi4g03461 1168 Coils Coil 1160 1168 - -
Vivi4g03461 1168 Pfam Reverse transcriptase-like 1021 1143 IPR002156 GO:0003676|GO:0004523
Vivi4g03461 1168 SUPERFAMILY Ribonuclease H-like 1019 1141 IPR012337 -
Vivi4g03461 1168 ProSiteProfiles Protein kinase domain profile. 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03461 Vivi-Chr4 151667873 151673568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03461 95 422 Core Cell Cycle Gene Families AT5G10270 52.035 1.07e-110 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi4g03461 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03461 K08819 - vvo:131595530 2276.13