Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03444 ATGCAAGACCAACAACCATTACCCACTCATGAACCTCCCATGATTTCCCACCAGACTGAGACCGGGCTAAACAAAGAAGTTGCGGATAGTGGAGCCGGCGGGAAGCGTCCTGATATTTCACTTCAAGTTCCGCCTAGACCTTTAGGGTTTGGTAGCGGTAGCACGCGTGGGCGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGTGATATCATCACCGAAAGACTTTTTGCGTGCTTTGAGCTTTAAAAGAAAAGAAAATGTAGTAGATGGTGAATCAAGCAGCCTCCTTAATTCAGACCCTAAGCCAGCTGCAGACAGTACTAGGATGGCCTCCATATCGGAAGTTTCATGGTCAAGATGTACTTCTCTTCCAGTTTCACATGCACCTAATCTGTCCCCTTTAGTTGCTACTCCTGTGTCCGCGAGGACATATAATGAACAACAGATTAAGCCACGTAAAGATGTTAAATCTAAGGTTTCAAGGTCCCTTTCAATTCCTGCACGAAATGTTGTTATCGTAAGATCCGTCTCTTTTGTTACCCGCAATGAACAAGAACAACAAGATACAAATGACGATCAAATAACTCCTGCGCCGGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGAATATGTCTTGACGCGTGTGATGAAAGAAATACCTTTAAAATGGAATGCCGTTGCAAAGGTGGTCTAGATTTGGTGCATGAAGAATGTTTAATCAAATGGTTCAACACAAAAGGAAACAAGAAATGTGATATATGCTTGGAAGAGGTTCAGAATTTACCGGTAACCTTGCTCCGCATACCCAGCTCCGTTCAACAAAGAAACAGACAGTTGCAGGATCACCAAACCTTAAATTCAGAGACACTAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAACTACTGCTTCCTGATTTGAAGACTCAAGCTCTCATTTTATCGGCACCGTTTTCCTTTACTTTGGGCCTCTTAGCATCTGTTTTTGCAATCGTCCTTGCGATCAAAGAGTATATATGGACATACGCCGCTCTTGAGTTTGCACTTGTGGCTTTAACTGTGCATCTGTTCTATACTTATTTCCATTTGGCGGCCATTTATTCAATACTACTTTCATCGATTTTGGGTTTTGGAGTTGCTATGGGAATCAACTATTTGTACATCCAGTATGTGACATGGAGATTTCAGATCTCAACTAATGATAATCCAGTATGA 1272 0.423 MQDQQPLPTHEPPMISHQTETGLNKEVADSGAGGKRPDISLQVPPRPLGFGSGSTRGRVLDHSQSFSKVISSPKDFLRALSFKRKENVVDGESSSLLNSDPKPAADSTRMASISEVSWSRCTSLPVSHAPNLSPLVATPVSARTYNEQQIKPRKDVKSKVSRSLSIPARNVVIVRSVSFVTRNEQEQQDTNDDQITPAPVEVTADEEIPEEEAVCRICLDACDERNTFKMECRCKGGLDLVHEECLIKWFNTKGNKKCDICLEEVQNLPVTLLRIPSSVQQRNRQLQDHQTLNSETLSAWQDFVVLVLISTICYFFFLEQLLLPDLKTQALILSAPFSFTLGLLASVFAIVLAIKEYIWTYAALEFALVALTVHLFYTYFHLAAIYSILLSSILGFGVAMGINYLYIQYVTWRFQISTNDNPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03444 423 CDD RING_CH-C4HC3_MARCH 215 261 - -
Vivi4g03444 423 PANTHER OS02G0165000 PROTEIN 61 419 - -
Vivi4g03444 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Vivi4g03444 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 269 IPR013083 -
Vivi4g03444 423 MobiDBLite consensus disorder prediction 1 65 - -
Vivi4g03444 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Vivi4g03444 423 MobiDBLite consensus disorder prediction 89 108 - -
Vivi4g03444 423 SUPERFAMILY RING/U-box 211 264 - -
Vivi4g03444 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Vivi4g03444 423 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03444 Vivi-Chr4 151532776 151536116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03444 201 322 C3H Transcription Factor Family AT2G37950 25.954 5.43e-08 51.2