Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03443 ATGGAACCCCAACCTCAACCAACTCCTCCTCCGATGGACGCTCCCGACGATCTCTCCTCCGTTTGGGACCTAAGCTACCTCCTCGACTTCAATCTCGACGACGACGCATTACTTAACTTAAACCTCCAAAACGAACCTCCACCTCCCCCTCCAATTCCAAACCCTAACCCTAACCCTAACCCTCCGGAGAATGACAAGATCCGAAAACGCGACCCGAGACTTACTTGCTCCAACTTCCTCGCGGGTCATGTACCTTGTGCATGCCCCGAACTTGATGCGCTGCTTGAGGATAACGGTTTACCAGGCAAGAAACGCGCTCGAGCTGCGCGTGCGTCTGCATCCGCGCGATGTCAGGTTCCGAGTTGTGAAGTTGATATCTCTGAACTTAAAGGCTATCATCGACGGCATAGGGTTTGTTTGCGATGTGCTACTGCTGTTACTGTTCTTATTGACGGCGAGGTGAAGAGATACTGTCAGCAGTGTGGAAAGTTTCATGTTTTACCGGATTTCGACGAAGGGAAAAGGAGCTGTAGAAGGAAATTGGAGCGGCATAATACTAGGAGGCGGAGAAAGCCTGCTGATTCTGCATCAGCGGTTGATCATGAAGTTCAAACTGTTACTCAGAATGATGATGCCAATTGTGATGGAGAAGCAGGGATAGATTATTCGAATTTGAGTAGTGAGAATATTGAAAAAAGAGTGTCCTTGGATCATGAAGAAGAACCGGTTGCTGTTGGGTCCTCAACTCCAGAGACCCAGAATATTAATGGGGAGAGTGGCGTGTCCTTTGTTGCTTCTGCTGAAACACAAGCAAATGTTGGAAATGATGTTTCCAATCTTTCCAAATCGCCTTCGTATTGTGACAATAAGAATGATTATTCATCTATGTGCCAAACAGGTCGGGTTTCTTTTAAGCTTTACGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGGCTCCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGCTGGAGGGATATATCCGCCCTGGGTGTACAATCCTGACAGTATTTGTTGCAATGCCAAATATTATGTGGATCAATTTACTCAAAGACCCTATGTATTATGTGCGTGATATTGTTGCTCCCAAAAAGATGCTATCTGGAAGAGGCGCCGCTCTAATTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAAGTTCTGTGACAAAAGTCGAGGTAAACATGCAGGCACCTAAGCTTCATTACATTCACCCCACATGCTTTGAAGCAGGAAAACCCATGGAATTTTTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTATGGAAAGTATATGAAGTACGAGTATTGCGTTCCGTCTCCACATAACTGGAGTGAAGACAGTATTTCTTGTTCTTTTGACAATCAGTTATATAAGATACGTGTCCCTCATATTGAGGAAAATCTCATGGGCCCTGCGTTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTTATTCCTGTACTTATTGGGGATAAAGAAATTTGCACTGAAATGAAGATATTGCAACAAAAACAAGATACATCTCTCCTTTCTAAACAATTTCGGTCTGCATCTGGTGGTTCTATTTGTAGCTCATGCAAAGCTTTTGTACATATTCATGCATCGTCATCAGACTTGCTTGTAGATATAGCATGGTTACTTAAGGATCCTACTTCAGAAAATTTTGACAGAATGGTATCTGCTTCACAGATTCAAAGATATTGCCATTTGTTGGATTTTCTAATAAACAATGATTCAACTATCATTTTGGGAAAAATATTGCAAAATTTGATAATTTTAACAGAAAGCATAAAATCCAATACAAATGATGTTGACATTGTCCAGCTACTGAAATGCATGCATAATGCCAGAGATGCTATTTGTCAGAAAGGTGGAAGTATAGTTTTGCACTCCAAAAGGGAAGGCTTTAAACCTGCCCGGTGCTGTTCTCAAGATGACAAGTTATCAGTTGATGAAGATAATTGTCAGGGTATCCTGTTTAATGCAGATCCAGAATTGGGAGTTCCGAGAAGTCTTACTTTTGATGAAAAAAATCATAACACACCACTTTTGAAAAGGGATATTATAATGAATATGGAAGACTTGCCTAATAGACGCGACCATCGACATATTACCCGGGGATTCTTGACCTCTCGACCGACTATATTTGTACTTGTTTCGGTTGTTGTTTGTCTTGCTGTATGCGTATCCGTCTATCATCGTGGAAGGGTTACCGAGTTAGCAGTATCCATTAGAAGGTGTTTGTTTAACCATTAA 2319 0.4204 MEPQPQPTPPPMDAPDDLSSVWDLSYLLDFNLDDDALLNLNLQNEPPPPPPIPNPNPNPNPPENDKIRKRDPRLTCSNFLAGHVPCACPELDALLEDNGLPGKKRARAARASASARCQVPSCEVDISELKGYHRRHRVCLRCATAVTVLIDGEVKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNTRRRRKPADSASAVDHEVQTVTQNDDANCDGEAGIDYSNLSSENIEKRVSLDHEEEPVAVGSSTPETQNINGESGVSFVASAETQANVGNDVSNLSKSPSYCDNKNDYSSMCQTGRVSFKLYDWNPAEFPRRLRLQIFQWLASMPVELEGYIRPGCTILTVFVAMPNIMWINLLKDPMYYVRDIVAPKKMLSGRGAALIHLNDMIFRVMKDGSSVTKVEVNMQAPKLHYIHPTCFEAGKPMEFFACGSNLLQPKFRLLVSFYGKYMKYEYCVPSPHNWSEDSISCSFDNQLYKIRVPHIEENLMGPAFIEVENESGLSNFIPVLIGDKEICTEMKILQQKQDTSLLSKQFRSASGGSICSSCKAFVHIHASSSDLLVDIAWLLKDPTSENFDRMVSASQIQRYCHLLDFLINNDSTIILGKILQNLIILTESIKSNTNDVDIVQLLKCMHNARDAICQKGGSIVLHSKREGFKPARCCSQDDKLSVDEDNCQGILFNADPELGVPRSLTFDEKNHNTPLLKRDIIMNMEDLPNRRDHRHITRGFLTSRPTIFVLVSVVVCLAVCVSVYHRGRVTELAVSIRRCLFNH 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03443 772 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 594 IPR044817 GO:0003677
Vivi4g03443 772 Pfam SBP domain 117 191 IPR004333 GO:0003677
Vivi4g03443 772 MobiDBLite consensus disorder prediction 182 201 - -
Vivi4g03443 772 MobiDBLite consensus disorder prediction 43 62 - -
Vivi4g03443 772 ProSiteProfiles Zinc finger SBP-type profile. 114 191 IPR004333 GO:0003677
Vivi4g03443 772 MobiDBLite consensus disorder prediction 38 69 - -
Vivi4g03443 772 Gene3D - 108 178 IPR036893 GO:0003677|GO:0005634
Vivi4g03443 772 SUPERFAMILY SBT domain 115 195 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03443 Vivi-Chr4 151361908 151369303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03443 9 766 SBP-box Gene Family AT5G18830 47.029 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi4g03443 SBP 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03443 - - gmx:100776034 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03443 4 151361908 151369303 Vivi4g03443 4 151361908 151369303 ECH