Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03424 ATGGCATCAATGGTTGCCAGTGGGAGCAGTCAAATGTCTTCTTCAGTTTCTGTCCAAGAAAAAGGAAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGAGATCCAAATAAGGTTATACCTTCACTTCAGCATGAGGGCCTCAGTTATGAATTCTCTGCTGAAAAAGTTGAAATGACCCCATGTTTTGGGCAAGTTACTGCTGCTGATTTGTGTAGTGGTAGCCAAGGTTGTTCTGATGGCTTGAAGCTTGACCTTGGATTATCTAGCCCTGCAATTTCATCAGTGGTTAGGCATAGCCATCATAAGGCTGAACTAGAGGCGGTTGAATCCCATGGGGTTGATTGGAGTGATCACATAGAAGCTCAGTTGGAAGAACTTCTCCTGAGCAATTTGCATACCATTTTCAAGAGTGCAATAAAAAAAATTGTTACTTGTGGCTACACTGAAGATGTTGCTACAAAGGCTATGTTAAGGCCTGGAATCTGTTATGGATGCAAAGATACTGTATCTAACATAGTTGATAACACATTGACTTTTCTAAGAAATGGCCAAGAGTTTGATCCTTCACGAGAGCATTATTTTGAAGATTTAAAGCAGCTTCAGAAGTATATCTTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCATTTTTCAGTGTTGGTGATGCAATGTGGTGTTTATTAATTTGTGACATGAACGTGTCCTATGCTTGTGCAATGGATGGCGACCCTCTAAGTAGTTTATACAGTGATGGCATTGGTGATGTCTGTTCTTCTGTCCAGACTGAATCTCAATCGAAAGTAGAAACCAAAGTTCCTGGATTGAGTCTTCCAAGTCCTTGTAATACAATTCCCCTGGGTTCCCAATCTGGGAAATCCTTTGTGGCGGAAAATTCTCAAGTTCCCAGTGGACTCTTGGAGAAACAGGGTGCTAATTCAGTATTTCATCCCGTTAACAAGTCATCTAGTACTTTCGCAACCTCTCAATCTCCCCTGATACAAGATAAGGGTGGGATTGTTAGAAAGGTACACCCCAGTAGCACCAAGAGGGACTATATATTTCGTCAGAAGTCCATCCATGTGGAAAAAGGTTATCGGACATACGGGTCTAAAGGGTCTTCAAGAGGAGGAAAGCTGAGTGGCTTGAGTGGTTTAATCTTGGATAAAAAACTTAAATCTGTATCAGAATCTACTACCATAAACTTAAAGAGTGCATCCATAAACATAAGCAAGGCAGTGGGAGTTAATGTCACTCAAGACAATCTTAACACCACTCGCTCATCTAACGATGGACAATCTACCCATACTTCGTTTAGTCTGGATCCTAATAATACTATTTCTCGTGCAGTCGATCCTTCATCTTCAGTACATGAAGCAAATGCTAAGCCTGCAGTTAGTAGCTCTCCAGATGCATTATCCGTTACAAATACTGACCTTTCTCTTTCACTGTCTTCAAAAAGCAGTTCTTCTAAGACACCTATCTGCTGCAGTCATGGTGGCAGTTGTGTTGGGATACCATATGACAAGTCCAAGGAACAATGGTTGCCCCAAGATAGAAAGGATGAGCTGATTTTGAAGATGGTTCCAAGGGTTCGGGAGATACAAAATGAACTTCAAGAATGGACAGAATGGGCAAATCAAAAGGTGATGCAGGCTGCTCGTCGGTTGAGTAAGGAGAAGGCCGAACTTAAGGCACTAAGGCAAGAGAAAGAAGAAGTTGAACGACTTAAAAAGGAGAAACAGTGTCTAGAAGAAAACACCATGAAAAAGCTTTTTGAGATGGAAAATGCCTTGGGTAAAGCAGGTGGACAAGTGGAACGAGCTAATACTGCAGTAAGGAAGCTCGAGATGGAGAATGCTGCATTGAGGAAAGAGATGGAACTTGCTAAGTTACGTGCGGCAGAATCAGCTACAAACTTTCAAGATGTCTCTAAGAGGGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAATCAGAAATCGTTGATACAGGAAGAGTTAATGACTGAAAAAAACAAATTGGCACAGCTATTGGCGGTAACAAAGCAAGTCGAAGCTCAAGCGGAGCAATTCGAGGCTAAACGGCGGCAGGCAGCAAAGAAAACCGAAGAACTTCTCTCATTGGCCAGTTCTTCAAAAAAAGAAAGAGAACAAATTGAGGAGTCAGGCAGAGCCAAGGAGGAGATGCTTAAATCGGAAGCGGAGGCGGAACTGCAAAGGTACAAAGATGACATCCAGAAACTTGAAAAAGAAGTTGCACAAATAAGGCAGAAATCCGACTCGTCAACAATTGCTGCTCTAAAAAGAGGAATCGATGGAAGCTATGCCGGTAGCTGGAAGGACATGAAAAAGGGTTCGGCTCTTGATGAACCCCAGAACGCATCGATTTCAGAACTGGTTCAAAAGTTAAATAGCTTCTCTATGACAGGAGGAGGAGAAAGAGGAGGAGGAGGAGTGAAACGGGAAAGAGAGTGTGTAATGTGCCTTTCGGAGGAGATGTCGGTCGTATTCCTTCCATGTGCTCATCAGGTTGTTTGCACAAAATGCAATGATCTCCATGAAAAACAAGGTATGCAAGAGTGTCCTTCATGTAGGAGCCCCATCCAGGAGCGGATTTCTGTGCGTTATATGCGTACATAA 2655 0.4256 MASMVASGSSQMSSSVSVQEKGSRNKRKFRADPPLGDPNKVIPSLQHEGLSYEFSAEKVEMTPCFGQVTAADLCSGSQGCSDGLKLDLGLSSPAISSVVRHSHHKAELEAVESHGVDWSDHIEAQLEELLLSNLHTIFKSAIKKIVTCGYTEDVATKAMLRPGICYGCKDTVSNIVDNTLTFLRNGQEFDPSREHYFEDLKQLQKYILAELVCVLREVRPFFSVGDAMWCLLICDMNVSYACAMDGDPLSSLYSDGIGDVCSSVQTESQSKVETKVPGLSLPSPCNTIPLGSQSGKSFVAENSQVPSGLLEKQGANSVFHPVNKSSSTFATSQSPLIQDKGGIVRKVHPSSTKRDYIFRQKSIHVEKGYRTYGSKGSSRGGKLSGLSGLILDKKLKSVSESTTINLKSASINISKAVGVNVTQDNLNTTRSSNDGQSTHTSFSLDPNNTISRAVDPSSSVHEANAKPAVSSSPDALSVTNTDLSLSLSSKSSSSKTPICCSHGGSCVGIPYDKSKEQWLPQDRKDELILKMVPRVREIQNELQEWTEWANQKVMQAARRLSKEKAELKALRQEKEEVERLKKEKQCLEENTMKKLFEMENALGKAGGQVERANTAVRKLEMENAALRKEMELAKLRAAESATNFQDVSKREKKTQMKFQSWENQKSLIQEELMTEKNKLAQLLAVTKQVEAQAEQFEAKRRQAAKKTEELLSLASSSKKEREQIEESGRAKEEMLKSEAEAELQRYKDDIQKLEKEVAQIRQKSDSSTIAALKRGIDGSYAGSWKDMKKGSALDEPQNASISELVQKLNSFSMTGGGERGGGGVKRERECVMCLSEEMSVVFLPCAHQVVCTKCNDLHEKQGMQECPSCRSPIQERISVRYMRT 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03424 884 MobiDBLite consensus disorder prediction 708 736 - -
Vivi4g03424 884 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g03424 884 SUPERFAMILY RING/U-box 824 877 - -
Vivi4g03424 884 Coils Coil 679 706 - -
Vivi4g03424 884 MobiDBLite consensus disorder prediction 1 41 - -
Vivi4g03424 884 PANTHER OS05G0141500 PROTEIN 11 879 IPR046934 -
Vivi4g03424 884 Coils Coil 550 590 - -
Vivi4g03424 884 Coils Coil 609 636 - -
Vivi4g03424 884 Coils Coil 729 770 - -
Vivi4g03424 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 818 881 IPR013083 -
Vivi4g03424 884 Pfam Zinc finger, C3HC4 type (RING finger) 827 875 - -
Vivi4g03424 884 MobiDBLite consensus disorder prediction 425 476 - -
Vivi4g03424 884 CDD RING-HC_MIP1-like 825 879 - -
Vivi4g03424 884 ProSiteProfiles Zinc finger RING-type profile. 830 870 IPR001841 -
Vivi4g03424 884 Pfam Family of unknown function (DUF6592) 133 244 IPR046527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03424 Vivi-Chr4 151105912 151110867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03424 830 879 C3H Transcription Factor Family AT1G73950 44.000 1.26e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03424 4 151105912 151110867 Vivi4g03424 4 151105912 151110867 ECH
Vivi4g03423 4 151105911 151110484 Vivi4g03424 4 151105912 151110867 PCT