Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03377 ATGGCTTCCGTTGCTTTCTTCAGAAAACGCCTTCTCCTATCTTTCCATTTCATATCTTCTTCCACTAACAACAATGTTGCATCTCTTCACAGATCCATGGCCACTTTCACACGAACAAAGCCTCATCTAAATGTTGGCACAATTGGGCATGTAGATCATGGCAAAACAACATTAACTGCTGCGATTACAAAGGTACTAGCTGATGAAGGTAAAGCCAAGGCCATTGCTTTTGATGAAATAGACAAGGCTCCTGAGGAGAAGAAAAGAGGAATTACCATTGCTACGGCTCATGTTGAATATGAGACAGCAAAGAGGCATTATGCTCATGTTGATTGCCCTGGACACGCAGACTATGTTAAGAATATGATAACTGGAGCTGCACAAATGGATGGTGGAATCCTTGTGGTTTCTGCTCCAGATGGTCCAATGCCTCAAACTAAGGAGCATATACTCCTCGCTCGTCAGGTTGGTGTGCCATCATTGGTCTGCTTTCTAAATAAAGTAGATACCGTTGATGATCTGGAGTTACTTGAACTTGTCGAAATGGAACTTCGCGAACTACTTAATTTCTACAAATTTCCCGGGGATGAGATCCCAATTGTGAGAGGTTCAGCTCTGTCTGCCTTGCAAGGGACTAATGAAGAACTTGGAAAGAAAGCTATCTTGAAACTAATGGATGCTGTCGATGAATACATTTCTGATCCCGTCAGGCAGCTTGACAAGCCTTTTTTAATGCCAATTGAAGATGTTTTCTCTATTCAGGGGCGTGGAACTGTTGTCACTGGTCGTGTTGAACAAGGCACTATCAAAGTTGGTGAAGAGGTTGAAATACTAGGACTAACACAGGGTCCACCTGTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATAGAGGGCAAGCTGGTGATAATGTAGGACTTCTTCTACGAGGTCTTAAGCGAGATGATGTACAGCGGGGAATGGTTATCACGAAGCCTGGTGCGTTGAAAACTTATAAGAAGTTTGAAGCGGAGATTTATGTTCTCTCAAAAGATGAAGGTGGCCGTCACACTGCTTTTTTCTCTAACTATATGCCTCAGTTTTACCTGAGGACTGCAGACATTACTGGAAAGGTGCAATTACCTGAAAACGTCAAGATGGTTATGCCTGGTGATAATGTGACTGCAACTTTTGAGCTGATATTACCTGTTCCTCTTGAACTTGGACAAAGATTCGCTTTGAGAGAAGGAGGCCGGACAGTTGGTGCAGGAGTGGTCTCGAAAGTGATTGCCTAG 1287 0.4312 MASVAFFRKRLLLSFHFISSSTNNNVASLHRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDTVDDLELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEILGLTQGPPVKTTVTGVEMFKKILDRGQAGDNVGLLLRGLKRDDVQRGMVITKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADITGKVQLPENVKMVMPGDNVTATFELILPVPLELGQRFALREGGRTVGAGVVSKVIA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03377 428 Gene3D Translation factors 372 427 - -
Vivi4g03377 428 SUPERFAMILY Translation proteins 237 333 IPR009000 -
Vivi4g03377 428 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 337 428 IPR009001 -
Vivi4g03377 428 Hamap Elongation factor Tu [tuf]. 31 428 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vivi4g03377 428 CDD EFTU_II 243 331 IPR033720 -
Vivi4g03377 428 Gene3D Translation factors 238 368 - -
Vivi4g03377 428 CDD EFTU_III 334 423 - -
Vivi4g03377 428 PANTHER ELONGATION FACTOR TU-RELATED 32 427 - -
Vivi4g03377 428 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 40 236 IPR000795 GO:0003924|GO:0005525
Vivi4g03377 428 Pfam Elongation factor Tu domain 2 257 328 IPR004161 GO:0005525
Vivi4g03377 428 Pfam Elongation factor Tu C-terminal domain 333 426 IPR004160 -
Vivi4g03377 428 PRINTS GTP-binding elongation factor signature 124 135 IPR000795 GO:0003924|GO:0005525
Vivi4g03377 428 PRINTS GTP-binding elongation factor signature 44 57 IPR000795 GO:0003924|GO:0005525
Vivi4g03377 428 PRINTS GTP-binding elongation factor signature 88 96 IPR000795 GO:0003924|GO:0005525
Vivi4g03377 428 PRINTS GTP-binding elongation factor signature 161 170 IPR000795 GO:0003924|GO:0005525
Vivi4g03377 428 PRINTS GTP-binding elongation factor signature 108 118 IPR000795 GO:0003924|GO:0005525
Vivi4g03377 428 Gene3D - 32 235 IPR027417 -
Vivi4g03377 428 NCBIfam small GTP-binding protein domain 44 180 IPR005225 GO:0005525
Vivi4g03377 428 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 81 96 IPR031157 -
Vivi4g03377 428 FunFam Elongation factor Tu 31 235 - -
Vivi4g03377 428 FunFam Elongation factor Tu 238 368 - -
Vivi4g03377 428 NCBIfam elongation factor Tu 32 427 IPR004541 GO:0003746|GO:0005525|GO:0006414
Vivi4g03377 428 CDD EF_Tu 41 235 IPR041709 -
Vivi4g03377 428 Pfam Elongation factor Tu GTP binding domain 40 233 IPR000795 GO:0003924|GO:0005525
Vivi4g03377 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 258 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03377 Vivi-Chr4 150360050 150362832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03377 38 426 Eukaryotic Initiation Factors Gene Family AT5G60390 30.137 2.20e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03377 K02358 - gmx:102667962 748.814