Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03353 ATGATTATCCCAGTGGCAGCAACATCATCCTCTGCCTGCAAACAAGAACTGCCTCTAATAAATTTCCAAAAGGGACTCACCAAAATGGAGTCATTATTTCACAATCGAAACAAAGATAAGGTGGTAGTGATAATGGGGGCCACAGGTACTGGAAAGACCAAATTAGCCATAGATTTGGCCAAACATTTTCAACCATCTGAAATTGTTAATTCAGATAAAATACAAGTTTATAAAGGTCTTGACATAACAACAAATAAGGTCACAGAAGAAGAATGTGATGGGGTCCCACATCATCTCTTGGGTTTATTTGATCCTACAACAAATTTCACTGCCAATGATTTTTGTTACCATGCTTGTTCAGCTATTGATTCAATTGTGCAAAAAGATGGGTTACCTATTATTGCTGGTGGTTCAAATTCTTATTTAGATGCCTTGGTGAATCATTGTACTGAATTTAGGTTAAGGTATGAGTGTTGTTTTCTTTGGGTTGATGTTGCACTTCCAGTCCTTCATTCTTCGCTTCAATCGCGCGTTGATCGTATGATTGAAGCTGGTCAAGTAGATGAAGTTCGTGAATTTTTTGACCCGTCGGGTGATTATACAAAAGGGATCCGAAGAGCTATTGGAGTGCCTGAATTTCATGATTTTCTTATGGCGGAAGCAAATTCAGCGGATGAGAGAATTAAGAAGAAGCTTCTTGAAGCTGCTATTACTAGGGTTAAGATTAATAATTGCACTCTTGCAAATCGACAACGTCAAAAGATTCAACGGTTAAATGGAATGTGGAAAAGGAGCATGCATCGTCTTGATGCCACTGAAACTGTTATTAGAAGTGGAACACTGGCTCGTAAGGAAGCATGGGAAGATCACGTACTCTCAAGGAGTCTTGTGATCCTTTACAACTTTCTTTACGGTGAAACACATGTTCGCTCAAAAAATATTTTACCTGAAAATATAATTAATTCTCTTTCTGGATCACAAACGAGACTTGCATTGTCGGGTGTTGCGGCAGCAACCCATTAA 1023 0.3871 MIIPVAATSSSACKQELPLINFQKGLTKMESLFHNRNKDKVVVIMGATGTGKTKLAIDLAKHFQPSEIVNSDKIQVYKGLDITTNKVTEEECDGVPHHLLGLFDPTTNFTANDFCYHACSAIDSIVQKDGLPIIAGGSNSYLDALVNHCTEFRLRYECCFLWVDVALPVLHSSLQSRVDRMIEAGQVDEVREFFDPSGDYTKGIRRAIGVPEFHDFLMAEANSADERIKKKLLEAAITRVKINNCTLANRQRQKIQRLNGMWKRSMHRLDATETVIRSGTLARKEAWEDHVLSRSLVILYNFLYGETHVRSKNILPENIINSLSGSQTRLALSGVAAATH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03353 340 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 38 302 IPR039657 -
Vivi4g03353 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 155 IPR027417 -
Vivi4g03353 340 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 167 266 - -
Vivi4g03353 340 Gene3D - 38 303 IPR027417 -
Vivi4g03353 340 FunFam Adenylate isopentenyltransferase 5, chloroplastic 167 266 - -
Vivi4g03353 340 Pfam IPP transferase 155 253 - -
Vivi4g03353 340 Pfam IPP transferase 75 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03353 Vivi-Chr4 149293930 149296229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03353 155 307 C2H2 Transcription Factor Family AT2G27760 31.844 4.53e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03353 K10760 - gmx:100812928 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03353 4 149293930 149296229 Vivi4g03353 4 149293930 149296229 ECH
Vivi4g03353 4 149293930 149296229 Vivi4g03353 4 149293930 149296229 PCT