Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03348 ATGGGTATTTCCTGGAGCAGTAGTAGAAGAAGAAACAATTTCATTCACAACCCACCTCAACAACCACCCTCACTTCCACCACCACCACCACCGCCTCATTATTACTACTCAACCGAATCACATCCACCACCACCACCACCTCACCAGCAAGGTTACTATTATCCCTCAACCACCACCGGCTATGCCACTCCCCATCACCCTCCTCCTCCTTCTCTTCAACCTCATACCCATTCGTTTTACTTCTCTAACCCTAATTCAAACGTCAACTACGCCAATCCTCGTGTCATGTTCCATCCTTCTTACTATGTAAATCAACAACATGCCTGGGGTCCACCTCCTCCTCTTCCTTTACCTTCTTCATCCACTCCGCCCCCTTACGTTGATCATCAAACTGCGAAGAAGATTAGGAATCATGTTAATGTTCATAAGGATACTTTGCGACTTGAAGTTGATGAGCATAACCCTGATCACCATCTCGTTTCTTTCGTTTTCGACGCTGTTTATGATGGAAGCATTACTGTCTCCTACTTTGCGAAGGAAGAAGATAAATGTAGGTTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGGGAAAGGAGTTGGCCAGAAATTTGCCCAGCCTTCAGGAACAGGGATTGACCTGGGCTTCTTTGAGTTGGACGATCTTTCAAAGCCTTCACCTGGAGAAGACGTCTTTCCTCTTGTAATATGCGCTGAAACATGTTTGGAAACTCCCTCGGAAAACGAAACACCTAAAAATTCCGATGATTCCACGCCAAATGCGTCACCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAACGGAATGATGCTTTCCAGATAAAAGTAGTTAAACAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGCTATATGGAATAGGAAACTCAGAAGCTGCGGGATTTGATGACAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGCATGTGCAGTGATTGTGCAAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAACCCATTGAGGAACTTATCGAGATCAAGGTGAAGAGTGGCGATCCATGA 1143 0.4497 MGISWSSSRRRNNFIHNPPQQPPSLPPPPPPPHYYYSTESHPPPPPPHQQGYYYPSTTTGYATPHHPPPPSLQPHTHSFYFSNPNSNVNYANPRVMFHPSYYVNQQHAWGPPPPLPLPSSSTPPPYVDHQTAKKIRNHVNVHKDTLRLEVDEHNPDHHLVSFVFDAVYDGSITVSYFAKEEDKCRFVPLFPDAFVPVKVPFGKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSENETPKNSDDSTPNASPHMQITQAVLEKRNDAFQIKVVKQILWIDGVRYELRELYGIGNSEAAGFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSDCAKALRLQSNKCPICRQPIEELIEIKVKSGDP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03348 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 374 IPR013083 -
Vivi4g03348 380 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Vivi4g03348 380 MobiDBLite consensus disorder prediction 19 51 - -
Vivi4g03348 380 PANTHER MAHOGUNIN 1 374 IPR045194 GO:0061630
Vivi4g03348 380 SUPERFAMILY RING/U-box 324 370 - -
Vivi4g03348 380 MobiDBLite consensus disorder prediction 1 80 - -
Vivi4g03348 380 CDD mRING-HC-C3HC5_MGRN1-like 323 364 IPR045195 -
Vivi4g03348 380 SMART ring_2 325 363 IPR001841 -
Vivi4g03348 380 MobiDBLite consensus disorder prediction 1 18 - -
Vivi4g03348 380 Pfam Zinc finger, C3HC4 type (RING finger) 323 369 - -
Vivi4g03348 380 FunFam probable E3 ubiquitin-protein ligase LOG2 309 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03348 Vivi-Chr4 149216058 149223642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03348 99 379 C3H Transcription Factor Family AT3G06140 60.554 1.47e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03348 - - gmx:100786054 493.041