Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03327 ATGGCCAATTTCACTTCCTTCTCTTCTTCATCTTCCACTCCTCCTCCTCCGCCTTCTTTCTCCTACATTTCAGCTCCGTCTTCTTCTTCTTCGGTTTTCGATGACGACTCTGTTGAGGATTCGTGTAGTATTTGCTTAGAGTCCTTCAGCGTTCATGACCCATCCACTGTTACTTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAATGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCTAGCCAAGAGCTTCTTGTCGCTGTGGAGGCTGAAAAATGCTTGAGATCCAGAAACAATAATTCATCTTCGCTCGTTAATTCTTCTGTCCCCTTTGAGCGTTTTAATGGTGACCATGATGCTTCTCGCTCAGATGATGTTGATTTTGATGAGCAAATTATGCAGCACCTATATGCCGCTGCACGTAGAGCTCGTTTCATAGAGAGACAGAGAAGACAAGGATCGTCCGGAGCAGGTCCATCAGAGGTATCTGGGGTGCAACCGACTCTTACAACTTCACTCGTTGGTAGTAGTTCTCCGACCACTGGTCTATCATCGACTGCCGACCTTCATCCCGAGGTTGCAAGAAACATTAGCCCTGAGACTGATGTCTCTTACCGACCCAGAGTTCTTTACAGTCCGTCACCACCTCAGGATGGGAGGAAACTAAATACTTCCGAGGTGTTCTCCTTGCCCGAGTCCATCAAATCCAAATTGACTGCTGCTTCAGCCAGATATAAGGAATCAATTTCCAAAAGTACCCGTGGACTCAAAGAGAAGTTACTTGCTCGTAATGTGACAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATAGCTGGAGTTTCACGTATGATTGAACGCCTTGAACTTGCATCAAAAAGGTCTAATTCGCCTATCGTTCCGGTCCGTAGTGAAGGAACTTCAGGCTTTCGAAATGAAGCCAGTGGAGGTGTGGTTCATAATGTTAGTTCAGTTGCTCCCTCACACATTTCTAGCCCTGCTGTTGTTAGCCGAATGGAAATTCCTCCACGTGTTCAGAATGGACATGATGCTGTGAAGATTTAA 1113 0.4564 MANFTSFSSSSSTPPPPPSFSYISAPSSSSSVFDDDSVEDSCSICLESFSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPASQELLVAVEAEKCLRSRNNNSSSLVNSSVPFERFNGDHDASRSDDVDFDEQIMQHLYAAARRARFIERQRRQGSSGAGPSEVSGVQPTLTTSLVGSSSPTTGLSSTADLHPEVARNISPETDVSYRPRVLYSPSPPQDGRKLNTSEVFSLPESIKSKLTAASARYKESISKSTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKRSNSPIVPVRSEGTSGFRNEASGGVVHNVSSVAPSHISSPAVVSRMEIPPRVQNGHDAVKI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03327 370 MobiDBLite consensus disorder prediction 165 199 - -
Vivi4g03327 370 Pfam Ring finger domain 40 82 IPR001841 -
Vivi4g03327 370 ProSiteProfiles Zinc finger RING-type profile. 42 82 IPR001841 -
Vivi4g03327 370 MobiDBLite consensus disorder prediction 1 28 - -
Vivi4g03327 370 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 91 - -
Vivi4g03327 370 SMART ring_2 42 82 IPR001841 -
Vivi4g03327 370 SUPERFAMILY RING/U-box 37 89 - -
Vivi4g03327 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 98 IPR013083 -
Vivi4g03327 370 MobiDBLite consensus disorder prediction 161 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03327 Vivi-Chr4 148715602 148718566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03327 36 90 C3H Transcription Factor Family AT4G00335 47.273 1.03e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03327 K19043 - gmx:100785684 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03327 4 148715602 148718566 Vivi4g03327 4 148715602 148718566 ECH