Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03320 ATGATGAATTGTTTTTCATGCTGCAAGTCAGAGGTTGAAACACCGTCTTATAAGAAAAAACGTTCCAAATATGTTTCCAAAGGAAGAAGAACATTCAAATCATTAGCAGCGGCTATGTCACTCAAAACAGGTAGTAGCAGACATAGACAGATTACAGCGGAGATATTAAAATACGGAACAGCCCAAAATGATGTTAAAGTATTAACGTATGAAGAAGTGGCTGAAGCGACGAATAACTTCAGTTCGGATAGTCTTATCGGAGAAGGTGGATTCGGGAATGTTTATAAAGGATATATAAAGAGCATTGAACAGACGGTAGCTGTGAAGAAATTGAATAGGGATGGGGATCAAGGAACAAGAGAATTTTTCGCCGAGGTTTTGATGTTGAGTATGGTGAAACATCCAAACCTTGTTAGGCTTGTTGGTTATTGTGTAGAAGATGATCAAAGGATTTTGGTTTATGAGCATATGGCTAATGGAAGCTTGGAGAATCACCTTCTAGATATAGGTAATGATAAGGAACCATTGGATTGGCAAACAAGGATGAAAATTGCTGATGGAGCGGCAAGAGGACTTGAGTACCTGCATAATTCTGCAGATCCACCGATTATTTTCCGCGATTTTAAATCGTCTAATATACTATTAGATGAAAATTTCAATGCAAAGCTTTCTGATTTTGGTCTTGCTAAGATTGCTCCAATTGATGGTGAGGGTCAGGGCTTGGTCTCAACTCGCGTTATGGGGACTTACGGTTATTGCGCACCAGAGTATGCTGCTACCGGTCAATTATCCTCAAAATCAGATATTTATAGTTTTGGTGTTGTGTTTTTGGAAATTATCTCCGGTAGACGAGTTATCGACCCTGCAAGATCGGCAGAAGAACAAAACTTAATTGATTGGGCGCAACCTTTGTTTAAGGACAGAACAAAGTTCACCCTAATGGCGGATCCTTTGCTTAAAGGCCAGTTTCCGGTGAAGGGACTATTTCAAGCTCTAGCAGTGGCAGCAATGTGTTTACAAGAAGAAGCCGATACACGGCCTTACATGGACGATGTGATAACGGCTCTTACGCATCTAGCAGTACACAAGACCGAAGAAAAAGACATAGCTGGTGAATCTCTAAAAATTGCTGGTCATGTTGAATCTTTTAGAGCTGCAAATTCAATTGGACCCGAAAGGGCATAA 1185 0.4034 MMNCFSCCKSEVETPSYKKKRSKYVSKGRRTFKSLAAAMSLKTGSSRHRQITAEILKYGTAQNDVKVLTYEEVAEATNNFSSDSLIGEGGFGNVYKGYIKSIEQTVAVKKLNRDGDQGTREFFAEVLMLSMVKHPNLVRLVGYCVEDDQRILVYEHMANGSLENHLLDIGNDKEPLDWQTRMKIADGAARGLEYLHNSADPPIIFRDFKSSNILLDENFNAKLSDFGLAKIAPIDGEGQGLVSTRVMGTYGYCAPEYAATGQLSSKSDIYSFGVVFLEIISGRRVIDPARSAEEQNLIDWAQPLFKDRTKFTLMADPLLKGQFPVKGLFQALAVAAMCLQEEADTRPYMDDVITALTHLAVHKTEEKDIAGESLKIAGHVESFRAANSIGPERA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03320 394 Pfam Protein kinase domain 82 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03320 394 CDD STKc_IRAK 86 359 - -
Vivi4g03320 394 SUPERFAMILY Protein kinase-like (PK-like) 64 360 IPR011009 -
Vivi4g03320 394 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03320 394 FunFam receptor-like protein kinase FERONIA 42 156 - -
Vivi4g03320 394 Gene3D Transferase(Phosphotransferase) domain 1 157 379 - -
Vivi4g03320 394 PANTHER OS07G0668900 PROTEIN 4 367 - -
Vivi4g03320 394 FunFam Serine/threonine-protein kinase PBS1 157 373 - -
Vivi4g03320 394 ProSitePatterns Protein kinases ATP-binding region signature. 86 110 IPR017441 GO:0005524
Vivi4g03320 394 Gene3D Phosphorylase Kinase; domain 1 38 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03320 Vivi-Chr4 148493223 148495347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03320 2 361 Glycoside Hydrolase AT3G07070 54.670 9.18e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vivi4g03320 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03320 - - vvo:131599912 779.63