Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03304 ATGTCGACGGTGTACGTCTTGGAACCGCCGACAAAAGGAAAAGTGGTCGTGAATACCACGCGCGGCCCTATCGACATCGAGCTCTGGCCTAAAGAAGCTCCCAAAGCCGTAAGAAACTTCGTTCAACTCTGCCTCGAAAATTACTACGACAACACCATCTTCCACCGTGTCATCAAAGACTTCCTCGTTCAGTGTGGTGACCCCACCGGAACCGGCACCGGAGGTGAGAGTATTTATGGAGATGTTTTTGCTGATGAGTTTCATTCGCGTATTAAATTCAAGCATAGAGGTTTGGTTGCAATGGCTAATTCTGGGACACCTAATTCTAATGGAAGTCAGTTTTTCATTACTCTTGACCGGTGTGATTGGCTTGATCGAAAGCATACCATTTTCGGAAAGGTGACTGGAGATACAATGTATAATCTGTTGAGACTTGGTGAAGTTGAGACGGATAAGAGTGACCGGCCTTTAGATCCAGCCCCAAAGATATTATCGGTTGAGGTGTTGTGGAACCCATTTGAAGACATTGTTCCAAGAACACTTCAGAAACCTGAGACTAAAGCTACACGTGATACAGATGGTAAAGATGCAAAGAAGAAAGGTGTAAAAAATTTGAACTTGCTTTCATTTGGAGAAGAAACTGAAGAAGAGGAAAAAGAATTGACATTGGTGAAGAAAAAGATTGTGAGCAGTCATGATGTCTTGAACGATCCTCGTCTTTTAAAGGATGAAAATGCCAATAATGAATTGAGTTCATCTGACAGTAAACTAAAAAGGGATCTGCAGTTATCTGTAAGGGATGCACTTATTTCAAAAAAAGAAGAGCCTCGGAAAGATTCTGGAGCTGATAAATTGTCTCATGTTGATTCCGGTGATGACGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAACTGGATGATCTCCCGCCCAAACCAAAGATGCAAAATGGAAGGTCGAGGTCCAGTGCAGACAAACATACTGTTTCAGGAGCTAGGTCCAATTCTGTAAGTGCGGATGAGGAGGATCAACCAAGAGTGGAAAAATTGTCCATGAAGAAAAAGGGAATAGGATCCGAAGCAAGAGCTGAACGAATGGCTAATGCAGATACAGATGTGCAGCTTTTGAATGAAGCTGAGAGAGGAAGACATTTGCAGAAGCAGAAGAAACGCAGACTTCAAGGGCGTGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAATCCACTAAATCAGCAAAGGAGACACCCACAACTGTTGAATCTAAACATGCTAGTGGTGAGGAATTATCTGACTGGAGAAGTGTTAGCTTAAAATTTTCCTCTGCAGCTGGCAAGGACCGCATGGCTCGCACTGAGGATCCAAATGATTATGTTGTGCTTGATCCTCTTTTGGAAAAGGGGAAAGAGAAGTTCAATAAGATGCAAGCAAAACAAAAGAGACGGGAACGAGAATGGGCTGGAAAATCCCTTACTTGA 1500 0.4267 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRVIKDFLVQCGDPTGTGTGGESIYGDVFADEFHSRIKFKHRGLVAMANSGTPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKSDRPLDPAPKILSVEVLWNPFEDIVPRTLQKPETKATRDTDGKDAKKKGVKNLNLLSFGEETEEEEKELTLVKKKIVSSHDVLNDPRLLKDENANNELSSSDSKLKRDLQLSVRDALISKKEEPRKDSGADKLSHVDSGDDDEADFDSRMRMQILKKRKELDDLPPKPKMQNGRSRSSADKHTVSGARSNSVSADEEDQPRVEKLSMKKKGIGSEARAERMANADTDVQLLNEAERGRHLQKQKKRRLQGREDEVLAKLEKFKSTKSAKETPTTVESKHASGEELSDWRSVSLKFSSAAGKDRMARTEDPNDYVVLDPLLEKGKEKFNKMQAKQKRREREWAGKSLT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03304 499 MobiDBLite consensus disorder prediction 346 374 - -
Vivi4g03304 499 MobiDBLite consensus disorder prediction 268 441 - -
Vivi4g03304 499 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 219 IPR044666 -
Vivi4g03304 499 SUPERFAMILY Cyclophilin-like 14 185 IPR029000 -
Vivi4g03304 499 MobiDBLite consensus disorder prediction 268 321 - -
Vivi4g03304 499 MobiDBLite consensus disorder prediction 398 437 - -
Vivi4g03304 499 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 168 IPR002130 GO:0000413|GO:0003755
Vivi4g03304 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Vivi4g03304 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vivi4g03304 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Vivi4g03304 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Vivi4g03304 499 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Vivi4g03304 499 MobiDBLite consensus disorder prediction 476 499 - -
Vivi4g03304 499 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 159 IPR002130 GO:0000413|GO:0003755
Vivi4g03304 499 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 180 - -
Vivi4g03304 499 MobiDBLite consensus disorder prediction 323 345 - -
Vivi4g03304 499 CDD cyclophilin_CeCYP16-like 8 180 - -
Vivi4g03304 499 Gene3D - 2 183 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03304 Vivi-Chr4 148026319 148034893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03304 9 173 U-box Gene Family AT5G67530 47.273 1.95e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03304 K12737 - gmx:100793148 770.77