Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03303 ATGATTATAAATCAAGTTGTCATTGTAATATCAGCCAATTGGACCAGTTCTATTTCTGTCAAAAAAACACAAATTGCATCAAACCCTTATTCTGCTAAAATGAAAATCACCTCCAATATCTTATTGGTCTTCTTGGTGATACCCATTTTTCTCCTAAACATGATTAGTTGTGAAAACGATGTGGTGAAGACAACATTAATACAGTTCCTGTCACAGCTCAAAGGCCAGCAGAATAACAATTCTACTTTGAATTGGAAACCAGACACTGATCCCTGCAAGGATCAATGGAATGGTGTATACTGTGATGCTCAAATGTCTATAAAGAGGTTGAATCTTTACAGGTTCAATTTGTCTGGAACTCTCGATGTCGCCTTGCTTTGTAACGCGCAGCCTCTGGCCGCATCGCTCACCTTTCTCAGTCTCGACGACAACAACATTAGGGGCGGAATAACATCCGAGATTGGAAACTGCAAACAACTCACTCGTCTTCACGTAAGTGGAAACCTGCTCGCCGGAAACCTTCCTACTTCACTTGCAATGTTAAACAATTTGAAAAGACTAGACCTTTCTAATAACAAGTTTTCAGGGCCGTTGCCAAACCTGGCTAGAATCTCAGGCCTCAATATGTTCCTAGCACAAAACAACAACCTCAACGAAAATATCCCGACTTTTTATTTCCCTAATTTCGATCATTTCAATGTCTCTTTTAACAATTTCAGTGGCCAAATTCCAGATGTACAAGGTCATTTCTTTGCAGACAGTTTTCTTGGTAATCCAGAACTATGTGGATATCCACTACAAAAAAACTGTACTGGTCAGATTCTGAGTAGTACTGTTAATAAGACATCAGAAGAAGAATCAAAAGGTCCTTCCAAAGAACAGATTTTGATATATTCAGGCTATGCTGCATTAGGTGTTATCATAATCCTTTTTGTACTCTTGAAGATGTGTAGAAGAAGCAAGAAGAGTGGAAAGAAGGTTGAAGCATCATCGAAAGACGATATCGAAAAACCGAGCTATGTTTCGAGTGAATCCAAATCAGAAGATGTAAGCAAATCAGGATTTTCAATTTCCTCTGAATGTGGAATGGTCTCACAACAATCACTTATTGTTCTTTCAAAACCAGTGGTGAGTGAATTGAAACTGGAGGAGTTGTTGAGAGCACCTGCTGAAATGATTGGGAGAGGAACTAATGGAAGTCTTTATAAAGTGATGCTAACAAATGGGATAGTAGTGGTTGTAAAAAGGATCAAGGATTGGAGTATTTCTAGTGATGAATTCAAGCAAAGAATGCAACTGTTGAATCAAGCAAAGCATTCTCATGTTCTGCCACCTCTTGCTTTCTATTGTAACAAACAAGAGAAGCTTTTGGTCTATGAATATCAGCATAATGGAAGTTTGTTCAAGCTTTTACATGGTACTTCAAAAAAAACCTTTGATTGGAGCAGCCGACTAGGAATTGCATCAACAATAGCAGAAGCATTAGCTTTCATGCATCAAGAGCTTGGCCAGCAAGGTATCATCCATGGAAACATGAAATCCTCAAACATTTTGATAAACAAAAACATGGAGCCTTGTATAAGTGAATATGGCACTATGCCTAAGGATGATCAACAAAGTTCAACTCTTGCATTTAAGGAAGATGTTTATGGTTTTGGTGTTATTCTTCTTGAACTTCTAACTGGAAAATTGGTGAAGAGTAATGGTATTGACTTGACTGATTGGGTTCAGTCAGTAGTGAGAGAAGAATGGACAGGTGAAGTGTTTGATAGGAGTTTGTTGGCAGAGTATGCAAGTGAAGAGAGGATGGTTAATATGCTTCAAGTGGCTATAAGATGTGTTAATAGTTCATTAGAGGCTAGGCCAAGTATGAACCAAGTGGCTCTTATGATTAACACCATTAAAGATGAAGAGGAAAAATCATTGATTTACCAAGTTTGA 1941 0.3807 MIINQVVIVISANWTSSISVKKTQIASNPYSAKMKITSNILLVFLVIPIFLLNMISCENDVVKTTLIQFLSQLKGQQNNNSTLNWKPDTDPCKDQWNGVYCDAQMSIKRLNLYRFNLSGTLDVALLCNAQPLAASLTFLSLDDNNIRGGITSEIGNCKQLTRLHVSGNLLAGNLPTSLAMLNNLKRLDLSNNKFSGPLPNLARISGLNMFLAQNNNLNENIPTFYFPNFDHFNVSFNNFSGQIPDVQGHFFADSFLGNPELCGYPLQKNCTGQILSSTVNKTSEEESKGPSKEQILIYSGYAALGVIIILFVLLKMCRRSKKSGKKVEASSKDDIEKPSYVSSESKSEDVSKSGFSISSECGMVSQQSLIVLSKPVVSELKLEELLRAPAEMIGRGTNGSLYKVMLTNGIVVVVKRIKDWSISSDEFKQRMQLLNQAKHSHVLPPLAFYCNKQEKLLVYEYQHNGSLFKLLHGTSKKTFDWSSRLGIASTIAEALAFMHQELGQQGIIHGNMKSSNILINKNMEPCISEYGTMPKDDQQSSTLAFKEDVYGFGVILLELLTGKLVKSNGIDLTDWVQSVVREEWTGEVFDRSLLAEYASEERMVNMLQVAIRCVNSSLEARPSMNQVALMINTIKDEEEKSLIYQV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03303 646 ProSiteProfiles Leucine-rich repeat profile. 183 205 IPR001611 GO:0005515
Vivi4g03303 646 Gene3D Ribonuclease Inhibitor 227 273 IPR032675 -
Vivi4g03303 646 PANTHER OS05G0588300 PROTEIN 42 636 - -
Vivi4g03303 646 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Vivi4g03303 646 Gene3D Transferase(Phosphotransferase) domain 1 542 645 - -
Vivi4g03303 646 Gene3D Transferase(Phosphotransferase) domain 1 463 541 - -
Vivi4g03303 646 Gene3D Phosphorylase Kinase; domain 1 356 461 - -
Vivi4g03303 646 SUPERFAMILY Protein kinase-like (PK-like) 391 630 IPR011009 -
Vivi4g03303 646 Gene3D Ribonuclease Inhibitor 62 226 IPR032675 -
Vivi4g03303 646 SUPERFAMILY L domain-like 84 248 - -
Vivi4g03303 646 ProSiteProfiles Protein kinase domain profile. 387 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03303 646 Pfam Protein kinase domain 391 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03303 646 Pfam Leucine rich repeat N-terminal domain 64 102 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03303 Vivi-Chr4 148023321 148026162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03303 34 635 Receptor kinase-like Gene Family AT3G08680 33.385 4.03e-88 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi4g03303 Pkinase 2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03303 - - vvo:131595445 1261.51