Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03257 ATGGCCACTTTAACCAATTTTATTATTATTCTCCTAGTTATTATTTCATCATGTTTAATTCTACCTACCTTAGCTAATTCAAATTCAAAAAAAGATCATAACAACAACGAACTATTAGATAACATTCCAAGCTACAAAATTCCAACACAAGACAATGTTGTCATGAACACAATTGATTCATGTTGGCGAACCAATTCAAATTGGGCATCAAACCGCCAATCGTTAGCCGATTGCGCGATCGGATTCGGCAGAGATGCCATCGGAGGAAAATACGGTGACATATACGAAGTAACCGATCCTTCTGACGATCCAATAAACCCGAAACAAGGCACACTTCGATACGGCGCAATCCAAACCGAACCACTCTGGATTACATTTGCAAATGACATGGTAATCAAGCTGAAAAATGAGCTCATTGTGAATAGCTACAAAACAATTGATGGAAGAGGTGTTAAGGTTGAAATTGGAAATAATGGACCTTGTATAACAATACAAGGTGTTAGTCATGTGATTGTTCATGGAATTAGTATTCATGATTGTAAACCGGGTGTGGCGGGTATGGTTAGGAGTAGTAATGAACATGTTGGATATCGCGAAGGGTGTGACGGCGATGGGATTAGTGTTTTTGCTTCTTCGAATATTTGGATTGATCATTGTTTTTTGGCGAGGTGCGCGGATGGACTTACCGATGTTACTCATGCTTCAAATCTTGTTACTATCTCAAATAATTACTTTACTCAGCATGATAAAGTGATGTTGCTTGGACACAATGATGATTACAGTGCTGATAGAGTAATGAAAGTAACAGTTGCTTTCAACCACTTTGGTAGTGATCTAATAGAAAGAATGCCAAGAGTAAGATTTGGTTATGCTCATGTTGTAAACAACCGATATGATGAGTGGCTCATGTATGCCATTGGTGGTAGTGCTGACCCTATTATTTTCAGTCAAGGAAACTACTTTCTTGCTTCCAAAAATTCTGATGCAAAACAGGTTACGAAAAGAGAAACGGATGGAAAATGGAGTAATTGGAAATGGAGGAGTTATGGTGATGAATTCTTAAATGGTGCTTATTTTGTACCATCTGGCTATGGAAGTTGTGCACCATCATATTCATCATCTCAAGACTTTGCTGCTGCTAAAGCTTCAATGGTGCCTTTATTAACACTCAATGCAGGACCTCTAGATTGTGTTGTTACCAAAGCATGTTAA 1212 0.382 MATLTNFIIILLVIISSCLILPTLANSNSKKDHNNNELLDNIPSYKIPTQDNVVMNTIDSCWRTNSNWASNRQSLADCAIGFGRDAIGGKYGDIYEVTDPSDDPINPKQGTLRYGAIQTEPLWITFANDMVIKLKNELIVNSYKTIDGRGVKVEIGNNGPCITIQGVSHVIVHGISIHDCKPGVAGMVRSSNEHVGYREGCDGDGISVFASSNIWIDHCFLARCADGLTDVTHASNLVTISNNYFTQHDKVMLLGHNDDYSADRVMKVTVAFNHFGSDLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPIIFSQGNYFLASKNSDAKQVTKRETDGKWSNWKWRSYGDEFLNGAYFVPSGYGSCAPSYSSSQDFAAAKASMVPLLTLNAGPLDCVVTKAC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03257 403 Gene3D - 55 396 IPR012334 -
Vivi4g03257 403 SUPERFAMILY Pectin lyase-like 76 401 IPR011050 -
Vivi4g03257 403 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Vivi4g03257 403 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Vivi4g03257 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vivi4g03257 403 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Vivi4g03257 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vivi4g03257 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vivi4g03257 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vivi4g03257 403 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Vivi4g03257 403 SMART amb_all 129 327 IPR002022 -
Vivi4g03257 403 Pfam Pectate lyase 135 321 IPR002022 -
Vivi4g03257 403 PANTHER PECTATE LYASE 18-RELATED 38 400 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03257 Vivi-Chr4 147043055 147044732 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03257 10 403 Polysaccharide Lyase AT4G22080 62.437 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03257 K01728 - gmx:100803229 624.78