Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03253 ATGAACACAATTGATACATGTTGGCGGACCAATTCAAATTGGGCATCAAACCGCCAATCGTTAGCCGACTGCGCGGTCGGATTCGGCAAAGACGCGATCGGAGGAAAGTACGGTGACATATACGAAGTAACCGATCCTTCCGACGATCCAATAAACCCGAAACAAGGCACACTTCGTTACGGAGCAATCCAAACCGAACCACTTTGGATTACATTTGCAAATGACATGGTAATCAAGCTGAAAAATGAGCTCATTGTGAATAGTTACAAAACAATTGATGGAAGAGGTGTTAAGGTTGAAATTGGAAATAATGGACCTTGTATTACAATACAAGGTGTTAGTCATGTGATTGTTCATGGAATTAGTATTCATGATTGTAAACCGGGTTTGGCGGGTATGGTTAGGAGTACTAATGAACATGTTGGATATCGCGAAGGGTGTGATGGCGATGGGATTAGTGTTTTCGCTTCTTCAAATATTTGGATTGATCATTGTTTTTTGGCGAGGTGCGCTGATGGACTTACCGATGTTACTCATGCTTCAAATTTTGTTACTATCTCAAATAATTACTTTACTCAGCATGATAAAGTGATGTTGCTTGGACACAATGATGATTACAGTGCTGATAGAGTAATGAAAGTAACAGTTGCTTTCAACCACTTTGGCAGTGATCTAATAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCTCATGTTGTAAACAACCGATATGATGAGTGGCTCATGTATGCCATTGGTGGTAGTGCTGACCCTATTATTTTCAGTCAAGGAAACTACTTTTTTGCTTCCAAAAAATCAGATGCAAAACAGGTTACGAAAAGAGAAACGGATGGAAAATGGAGTAATTGGAAATGGAGGAGTTATGGTGATGAATTCTTAAATGGTGCTTATTTTGTACCATCTGGATATGGAAGTTGTGCACCATTATATTCATCATCTCAAGACTTTGCTGCTGCTAAAGCTTCAATGGTGCCTTTATTAACACTCAATGCAGGACCTCTTGATTGTGTTGTTAACAAAGCATGTTAA 1050 0.3933 MNTIDTCWRTNSNWASNRQSLADCAVGFGKDAIGGKYGDIYEVTDPSDDPINPKQGTLRYGAIQTEPLWITFANDMVIKLKNELIVNSYKTIDGRGVKVEIGNNGPCITIQGVSHVIVHGISIHDCKPGLAGMVRSTNEHVGYREGCDGDGISVFASSNIWIDHCFLARCADGLTDVTHASNFVTISNNYFTQHDKVMLLGHNDDYSADRVMKVTVAFNHFGSDLIERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPIIFSQGNYFFASKKSDAKQVTKRETDGKWSNWKWRSYGDEFLNGAYFVPSGYGSCAPLYSSSQDFAAAKASMVPLLTLNAGPLDCVVNKAC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03253 349 PRINTS Pollen allergen Amb family signature 47 72 IPR018082 -
Vivi4g03253 349 PRINTS Pollen allergen Amb family signature 148 169 IPR018082 -
Vivi4g03253 349 PRINTS Pollen allergen Amb family signature 83 99 IPR018082 -
Vivi4g03253 349 PRINTS Pollen allergen Amb family signature 228 247 IPR018082 -
Vivi4g03253 349 PRINTS Pollen allergen Amb family signature 290 314 IPR018082 -
Vivi4g03253 349 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Vivi4g03253 349 PRINTS Pollen allergen Amb family signature 320 343 IPR018082 -
Vivi4g03253 349 PRINTS Pollen allergen Amb family signature 250 269 IPR018082 -
Vivi4g03253 349 SMART amb_all 75 273 IPR002022 -
Vivi4g03253 349 SUPERFAMILY Pectin lyase-like 22 347 IPR011050 -
Vivi4g03253 349 Pfam Pectate lyase 81 267 IPR002022 -
Vivi4g03253 349 Gene3D - 1 342 IPR012334 -
Vivi4g03253 349 PANTHER PECTATE LYASE 18-RELATED 1 347 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03253 Vivi-Chr4 146915311 146916989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03253 2 349 Polysaccharide Lyase AT1G11920 69.341 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03253 K01728 - gmx:100803229 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00213 1 4196050 4197619 Vivi4g03253 4 146915311 146916989 PCT