Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03244 ATGATTACCACATATCAAATTTTCTTAGTTATTATTCTCTTTCTATTATTATTCATCATTAATATGAAAACTGAAGCAACATGTTCTTCAGGTTGCAACCTTGCTTTAGCTTCCTATTCCATACCTGAAGGAACAGATCTAACATACATAAGCAACCTTTTCAACCAACAATCCTCAGAAATTCTCAAACACAACCCAAACCTTAAAAACCCCGATGTTATTCTAAGCCAAACAAAAATCAACGTGCCATTCACGTGCGAGTGTCTCAACGGTTTGTTCCTAGGACACACTTTCTCGTACAAAACAAAACACGGTGACACGTACAAGGCAATTGTTCATCTTGATTATTCTAACCTTACTACTGAGGATTGGATTACCAGAGTCAATAGTTATCCAACTACGAATATACCCGATAATGTTAAGATTAATGTTACCGTTAATTGTTCTTGCGGTGATCGACACGTGTCCAAGGATTATGGGTTGTTTTTGACGTATCCGCTTCGTGACGGTGATAGTTTGAAGGGGATTGCGGCGGAGTATGGTGTTCCGGCGGAGGTGGTGCAGAGGTATAATCCTCAGTCGGATTTTAGTGCTGGACGTGGTCTTGTGTTTTTGCCGGCAAAAGATGAATTTGGAAACTTTCCACCACTGCAAATAAAATCAGGAATGTCCAAAGGAACCATTGCTGGCATAGTTATTGGAGGAGCTTTTGGAATTTTACTTCTGGCACTCATTCTATATGTTGTGTTCTATAGAAGAAAAAAAGTTGCTCAAGTAACCCTTCTACCAGTACCAGGTGCATCTGAAGATCAATATAGTCAACTCCAACATGGTTGTGGAAGTAGTTTGGATAAGGCATCCGAATCAACTACTATTCCTTCTCCGAGGTTGACAGGTATTACAGTTGATAAGTCAGTGGAGTTTTCATATGAGGAGTTAGCCAAAGCTACTGACGGCTTTAGTGCAGCGAATATAATCGGTCGAGGTGGTTTTGGATTAGTTTACTATGCCGAGCTTCGAAACGAGAAAGCTGCAATAAAAAAGATGGATATGCAAGCATCAAAAGAATTCCTAGCTGAACTAAAGGTTCTGACACACGTTCATCACTTGAATTTGGTGCGGCTAATTGGATATTGCGTCGAGGGCTCATTATTTTTGGTTTATGAATACATTGAGAATGGAAATTTAAGTCAACACTTGCGTGGAACAGGGAAGGAACCATTATCATGGCCAGCTAGAGTTCAAATTGCATTAGACTCGGCAAGAGGACTTGAATACATTCATGAGCATACAGTTCCTGTCTACATTCATAGAGATGTTAAATCAGCAAACATTTTGATAGACAAAAACTTCCGAGGAAAGGTTGCGGATTTTGGTTTGACAAAACTAACTGAATATGGTAGTTCCTCGTTACAAACACGCCTTGTCGGGACATTTGGCTATATGCCTCCAGAATATGCACAATATGGCGAAGTTTCTCCCAAGGTAGACGTATATGCATTTGGAGTTGTTTTGTTTGAGCTTATATCTGGGAAGCCGGCTATTGTGAAGACAAATGAGACGGAAAACGAGTCCAAGGGATTAGTCGCACTGTTTGAAGAAGTTATTGTTCTGCCAGACCCAAAAGAAGATCTTGGTAAACTCGTCGATCCTAGGCTTGGTGAAAATTACCCTATTGACTCGGTATTTAAGATGTGTCAACTTGCGAAAGCTTGTACACATGAAAATCCTCAACTGAGGCCAAGCATGAGATCAATTGTAGTTGCTTTAATGACACTTTCATCTGCAGCTGAGGATTGGGATGTTGGATCATTCTATGAAAATCAAGCATTAGTGCATTTAATGTCTGGAAGGTAG 1857 0.4006 MITTYQIFLVIILFLLLFIINMKTEATCSSGCNLALASYSIPEGTDLTYISNLFNQQSSEILKHNPNLKNPDVILSQTKINVPFTCECLNGLFLGHTFSYKTKHGDTYKAIVHLDYSNLTTEDWITRVNSYPTTNIPDNVKINVTVNCSCGDRHVSKDYGLFLTYPLRDGDSLKGIAAEYGVPAEVVQRYNPQSDFSAGRGLVFLPAKDEFGNFPPLQIKSGMSKGTIAGIVIGGAFGILLLALILYVVFYRRKKVAQVTLLPVPGASEDQYSQLQHGCGSSLDKASESTTIPSPRLTGITVDKSVEFSYEELAKATDGFSAANIIGRGGFGLVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTGKEPLSWPARVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKVDVYAFGVVLFELISGKPAIVKTNETENESKGLVALFEEVIVLPDPKEDLGKLVDPRLGENYPIDSVFKMCQLAKACTHENPQLRPSMRSIVVALMTLSSAAEDWDVGSFYENQALVHLMSGR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03244 618 SUPERFAMILY Protein kinase-like (PK-like) 297 590 IPR011009 -
Vivi4g03244 618 CDD LysM 164 195 IPR018392 -
Vivi4g03244 618 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 10 604 IPR044812 GO:0019199|GO:0045087
Vivi4g03244 618 Pfam Protein tyrosine and serine/threonine kinase 323 589 IPR001245 GO:0004672|GO:0006468
Vivi4g03244 618 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Vivi4g03244 618 FunFam LysM receptor kinase 2 299 390 - -
Vivi4g03244 618 ProSiteProfiles Protein kinase domain profile. 320 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03244 618 SMART serkin_6 320 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03244 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Vivi4g03244 618 CDD STKc_IRAK 326 587 - -
Vivi4g03244 618 Gene3D Phosphorylase Kinase; domain 1 301 390 - -
Vivi4g03244 618 Gene3D Transferase(Phosphotransferase) domain 1 391 602 - -
Vivi4g03244 618 CDD TM_EGFR-like 224 258 - -
Vivi4g03244 618 FunFam PTI1-like tyrosine-protein kinase 3 391 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03244 Vivi-Chr4 146775805 146780537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03244 10 618 Receptor kinase-like Gene Family AT3G21630 56.381 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vivi4g03244 PK_Tyr_Ser-Thr 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03244 - K13429 gmx:100802308 961.444